diff --git a/anatomical_map.json b/anatomical_map.json
index 9e05632..49b86cb 100644
--- a/anatomical_map.json
+++ b/anatomical_map.json
@@ -1,8 +1,4 @@
{
- "urinary_1": {
- "term": "UBERON:0001008",
- "name": "renal system"
- },
"urinary_2": {
"term": "UBERON:0001255",
"name": "urinary bladder"
@@ -15,10 +11,6 @@
"term": "UBERON:0001258",
"name": "neck of urinary bladder"
},
- "urinary_5": {
- "term": "UBERON:0004919",
- "name": "external urethral sphincter"
- },
"urinary_6": {
"term": "UBERON:0000483",
"name": "epithelium"
@@ -31,33 +23,21 @@
"term": "UBERON:0035965",
"name": "wall of blood vessel"
},
- "urinary_10": {
- "term": "UBERON:0004230",
- "name": "urinary bladder neck smooth muscle"
- },
- "urinary_12": {
- "term": "UBERON:0000056",
- "name": "ureter"
- },
- "urinary_13": {
- "term": "UBERON:0002113",
- "name": "kidney"
- },
"urinary_14": {
"term": "UBERON:0000057",
"name": "urethra"
},
"urinary_15": {
- "term": "ILX:0738416",
- "name": "rhabdosphincter of female"
+ "term": "UBERON:0011380",
+ "name": "female external urethral sphincter"
},
"urinary_16": {
"term": "UBERON:0002384",
"name": "connective tissue"
},
"urinary_17": {
- "term": "ILX:0738408",
- "name": "Rhabdosphincter of male"
+ "term": "UBERON:0011379",
+ "name": "male external urether"
},
"urinary_18": {
"term": "UBERON:0004538",
@@ -79,10 +59,6 @@
"term": "ILX:0795055",
"name": "lower ureter"
},
- "cardio_1": {
- "term": "UBERON:0004535",
- "name": "cardiovascular system"
- },
"cardio_2": {
"term": "UBERON:0000948",
"name": "heart"
@@ -131,54 +107,22 @@
"term": "ILX:0738316",
"name": "Aortic arch baroreceptors"
},
- "cardio_14": {
- "term": "UBERON:0001530",
- "name": "common carotid artery plus branches"
- },
- "cardio_15": {
- "term": "UBERON:0001532",
- "name": "internal carotid artery"
- },
"cardio_16": {
"term": "UBERON:0004664",
"name": "aorta tunica adventitia"
},
- "cardio_17": {
- "term": "UBERON:0005742",
- "name": "adventitia"
- },
- "cardio_18": {
- "term": "UBERON:0001986",
- "name": "endothelium"
- },
"cardio_19": {
"term": "UBERON:0003380",
"name": "cardiac muscle of left atrium"
},
- "cardio_20": {
- "term": "UBERON:0001986",
- "name": "endothelium"
- },
"cardio_21": {
"term": "UBERON:0003379",
"name": "cardiac muscle of right atrium"
},
- "cardio_22": {
- "term": "UBERON:0001986",
- "name": "endothelium"
- },
- "cardio_23": {
- "term": "UBERON:0003382",
- "name": "cardiac muscle of left ventricle"
- },
"cardio_24": {
"term": "UBERON:0015129",
"name": "epicardial fat"
},
- "cardio_25": {
- "term": "UBERON:0003381",
- "name": "cardiac muscle of right ventricle"
- },
"cardio_26": {
"term": "UBERON:0001072",
"name": "posterior vena cava"
@@ -195,22 +139,6 @@
"term": "UBERON:0002349",
"name": "Myocardium"
},
- "cardio_31": {
- "term": "UBERON:0001074",
- "name": "Pericardial Cavity"
- },
- "cardio_32": {
- "term": "UBERON:0002409",
- "name": "Pericardial Fluid"
- },
- "cardio_33": {
- "term": "UBERON:0002408",
- "name": "Parietal Serous Pericardium"
- },
- "cardio_34": {
- "term": "UBERON:0002359",
- "name": "Fibrous Pericardium"
- },
"cardio_35": {
"term": "UBERON:0007240",
"name": "Tunica Adventitia of Artery"
@@ -227,18 +155,10 @@
"term": "ILX:0738304",
"name": "Wall of Arch of Aorta"
},
- "respiratory_1": {
- "term": "UBERON:0001004",
- "name": "respiratory system"
- },
"respiratory_2": {
"term": "UBERON:0002048",
"name": "lung"
},
- "respiratory_3": {
- "term": "UBERON:0003126",
- "name": "trachea"
- },
"respiratory_4": {
"term": "UBERON:0001103",
"name": "diaphragm"
@@ -247,14 +167,6 @@
"term": "ILX:0738326",
"name": "Wall of larynx"
},
- "respiratory_6": {
- "term": "UBERON:0003604",
- "name": "trachea cartilage"
- },
- "respiratory_7": {
- "term": "UBERON:0000211",
- "name": "ligament"
- },
"respiratory_8": {
"term": "ILX:0738317",
"name": "Laryngeal mechanoreceptors"
@@ -279,14 +191,6 @@
"term": "UBERON:0001707",
"name": "nasal cavity"
},
- "respiratory_14": {
- "term": "UBERON:0001740",
- "name": "arytenoid cartilage"
- },
- "respiratory_15": {
- "term": "UBERON:0001005",
- "name": "respiratory airway"
- },
"respiratory_16": {
"term": "UBERON:0003387",
"name": "smooth muscle of trachea"
@@ -343,38 +247,14 @@
"term": "UBERON:0000379",
"name": "Tracheal Mucosa"
},
- "respiratory_30": {
- "term": "ILX:0742928",
- "name": "laryngeal vestibule"
- },
- "digestive_1": {
- "term": "UBERON:0001007",
- "name": "digestive system"
- },
"digestive_2": {
"term": "UBERON:0000945",
"name": "stomach"
},
- "digestive_3": {
- "term": "UBERON:0000059",
- "name": "large intestine"
- },
- "digestive_4": {
- "term": "UBERON:0001155",
- "name": "colon"
- },
- "digestive_5": {
- "term": "UBERON:0002108",
- "name": "small intestine"
- },
"digestive_6": {
"term": "UBERON:0001831",
"name": "parotid gland"
},
- "digestive_7": {
- "term": "UBERON:0001113",
- "name": "lobe of liver"
- },
"digestive_8": {
"term": "UBERON:0002107",
"name": "liver"
@@ -395,10 +275,6 @@
"term": "UBERON:0001043",
"name": "esophagus"
},
- "digestive_13": {
- "term": "UBERON:0001153",
- "name": "caecum"
- },
"digestive_14": {
"term": "UBERON:0001156",
"name": "ascending colon"
@@ -447,18 +323,6 @@
"term": "UBERON:0000167",
"name": "oral cavity"
},
- "digestive_28": {
- "term": "UBERON:0008972",
- "name": "right colon"
- },
- "digestive_29": {
- "term": "UBERON:0001157",
- "name": "transverse colon"
- },
- "digestive_30": {
- "term": "UBERON:0008971",
- "name": "left colon"
- },
"digestive_31": {
"term": "UBERON:0002110",
"name": "gall bladder"
@@ -471,46 +335,14 @@
"term": "UBERON:0001736",
"name": "submandibular gland"
},
- "digestive_34": {
- "term": "UBERON:0001206",
- "name": "serosa of small intestine"
- },
- "digestive_35": {
- "term": "UBERON:0012402",
- "name": "small intestine smooth muscle longitudinal layer"
- },
"digestive_36": {
"term": "ILX:0793739",
"name": "Nerve fiber from submandibular ganglion to sublingual gland"
},
- "digestive_37": {
- "term": "UBERON:0012401",
- "name": "small intestine smooth muscle circular layer"
- },
"digestive_38": {
"term": "ILX:0793738",
"name": "Nerve fiber from submandibular ganglion to mouth mucosa"
},
- "digestive_39": {
- "term": "UBERON:0001238",
- "name": "lamina propria of small intestine"
- },
- "digestive_40": {
- "term": "UBERON:0001902",
- "name": "epithelium of small intestine"
- },
- "digestive_41": {
- "term": "UBERON:0018543",
- "name": "lumen of intestine"
- },
- "digestive_42": {
- "term": "UBERON:0003454",
- "name": "small intestine Peyer's patch"
- },
- "digestive_43": {
- "term": "UBERON:0001210",
- "name": "muscularis mucosae of small intestine"
- },
"digestive_44": {
"term": "UBERON:0002394",
"name": "bile duct"
@@ -831,22 +663,10 @@
"term": "UBERON:0000473",
"name": "testis"
},
- "reproductive_4": {
- "term": "UBERON:0000992",
- "name": "ovary"
- },
"reproductive_5": {
"term": "UBERON:0002367",
"name": "prostate gland"
},
- "reproductive_6": {
- "term": "UBERON:0002247",
- "name": "uterine horn"
- },
- "reproductive_7": {
- "term": "UBERON:0003885",
- "name": "mesometrium"
- },
"reproductive_8": {
"term": "UBERON:0003889",
"name": "fallopian tube"
@@ -987,10 +807,6 @@
"term": "ILX:0738319",
"name": "T1-T2 intercostal muscle"
},
- "muscle_2": {
- "term": "UBERON:0001134",
- "name": "skeletal muscle tissue"
- },
"endocrine_1": {
"term": "UBERON:0002046",
"name": "thyroid gland"
@@ -999,22 +815,6 @@
"term": "UBERON:0002370",
"name": "thymus"
},
- "endocrine_3": {
- "term": "UBERON:0002369",
- "name": "adrenal gland"
- },
- "endocrine_4": {
- "term": "UBERON:0009753",
- "name": "adrenal gland cortex zone"
- },
- "endocrine_5": {
- "term": "UBERON:0001236",
- "name": "adrenal medulla"
- },
- "endocrine_6": {
- "term": "ILX:0102147",
- "name": "Chromaffin cell"
- },
"endocrine_7": {
"term": "UBERON:0001233",
"name": "right adrenal gland"
@@ -1027,30 +827,10 @@
"term": "UBERON:0000019",
"name": "camera-type eye"
},
- "body_2": {
- "term": "UBERON:0006378",
- "name": "strand of vibrissa hair"
- },
- "body_3": {
- "term": "UBERON:0000978",
- "name": "leg"
- },
- "body_4": {
- "term": "UBERON:0002415",
- "name": "tail"
- },
- "body_5": {
- "term": "UBERON:0001690",
- "name": "ear"
- },
"body_6": {
"term": "UBERON:0013702",
"name": "body proper"
},
- "body_7": {
- "term": "UBERON:0000165",
- "name": "mouth"
- },
"body_8": {
"term": "UBERON:0001723",
"name": "tongue"
@@ -1067,10 +847,6 @@
"term": "UBERON:0001817",
"name": "Lacrimal gland"
},
- "eye_2": {
- "term": "UBERON:0001697",
- "name": "Orbit of Skull"
- },
"eye_3": {
"term": "UBERON:0001769",
"name": "Iris"
@@ -1083,10 +859,6 @@
"term": "UBERON:0001605",
"name": "Ciliary muscle"
},
- "circulatory_1": {
- "term": "UBERON:0001981",
- "name": "blood vessel"
- },
"receptor_1": {
"term": "ILX:0100241",
"name": "Acetylcholine (muscarinic) receptor"
@@ -1095,10 +867,6 @@
"term": "ILX:0101253",
"name": "Beta2 receptor"
},
- "receptor_3": {
- "term": "ILX:0107579",
- "name": "Nicotinic Acetylcholine Receptor"
- },
"spinal_1": {
"term": "UBERON:0006469",
"name": "C1 segment of cervical spinal cord"
@@ -1288,8 +1056,12 @@
"name": "spinal nerve"
},
"spinal_51": {
- "term": "UBERON:0011776",
- "name": "Dorsal commissural nucleus"
+ "term": "UBERON:0014631",
+ "name": "dorsal gray commissure of spinal cord"
+ },
+ "spinal_52": {
+ "term": "UBERON:0014630",
+ "name": "ventral gray commissure of spinal cord"
},
"spinal_53": {
"term": "UBERON:0002240",
@@ -1315,14 +1087,6 @@
"term": "ILX:0738291",
"name": "T1-ICG sympathetic cord"
},
- "spinal_65": {
- "term": "ILX:0777088",
- "name": "L1 - L2 Interganglionic segment"
- },
- "spinal_68": {
- "term": "ILX:0738371",
- "name": "Rexed Lamina VII of T1"
- },
"spinal_69": {
"term": "UBERON:0006463",
"name": "S4 segment of sacral spinal cord"
@@ -1343,22 +1107,10 @@
"term": "UBERON:0002336",
"name": "corpus callosum"
},
- "brain_4": {
- "term": "UBERON:0000446",
- "name": "septum of telencephalon"
- },
"brain_5": {
"term": "UBERON:0000007",
"name": "pituitary gland"
},
- "brain_6": {
- "term": "UBERON:0002129",
- "name": "cerebellar cortex"
- },
- "brain_7": {
- "term": "UBERON:0027333",
- "name": "arbor vitae"
- },
"brain_8": {
"term": "UBERON:0002037",
"name": "cerebellum"
@@ -1367,10 +1119,6 @@
"term": "UBERON:0001930",
"name": "paraventricular nucleus of hypothalamus"
},
- "brain_10": {
- "term": "UBERON:0009918",
- "name": "retrotrapezoid nucleus"
- },
"brain_11": {
"term": "UBERON:0005807",
"name": "rostral ventrolateral medulla"
@@ -1411,18 +1159,6 @@
"term": "UBERON:0000956",
"name": "cerebral cortex"
},
- "brain_22": {
- "term": "UBERON:0005366",
- "name": "olfactory lobe"
- },
- "brain_23": {
- "term": "UBERON:0001981",
- "name": "blood vessel"
- },
- "brain_24": {
- "term": "UBERON:0002264",
- "name": "olfactory bulb"
- },
"brain_25": {
"term": "UBERON:0001891",
"name": "midbrain"
@@ -1435,18 +1171,10 @@
"term": "UBERON:0001896",
"name": "medulla oblongata"
},
- "brain_28": {
- "term": "UBERON:0001890",
- "name": "forebrain"
- },
"brain_29": {
"term": "UBERON:0001894",
"name": "diencephalon"
},
- "brain_31": {
- "term": "UBERON:0001869",
- "name": "cerebral hemisphere"
- },
"brain_32": {
"term": "UBERON:0002022",
"name": "insula"
@@ -1455,38 +1183,10 @@
"term": "UBERON:0000955",
"name": "brain"
},
- "brain_36": {
- "term": "UBERON:0001928",
- "name": "preoptic area"
- },
- "brain_37": {
- "term": "UBERON:0001908",
- "name": "optic tract"
- },
- "brain_38": {
- "term": "UBERON:0002743",
- "name": "basal forebrain"
- },
- "brain_39": {
- "term": "UBERON:0001063",
- "name": "flocculus"
- },
"brain_40": {
"term": "UBERON:0001905",
"name": "pineal body"
},
- "brain_41": {
- "term": "UBERON:0001945",
- "name": "superior colliculus"
- },
- "brain_42": {
- "term": "UBERON:0001946",
- "name": "inferior colliculus"
- },
- "brain_43": {
- "term": "UBERON:0002265",
- "name": "olfactory tract"
- },
"brain_45": {
"term": "UBERON:0007634",
"name": "Parabrachial Nucleus"
@@ -1495,10 +1195,6 @@
"term": "UBERON:0009918",
"name": "Retrotrapezoid Nucleus"
},
- "brain_49": {
- "term": "UBERON:0001893",
- "name": "Telencephalon"
- },
"brain_50": {
"term": "UBERON:0001954",
"name": "hippocampus"
@@ -1535,30 +1231,18 @@
"term": "ILX:0793626",
"name": "Ventrolateral periaqueductal gray"
},
- "bolser_4": {
- "term": "ILX:0738374",
- "name": "External branch of superior laryngeal nerve"
+ "brain_59": {
+ "term": "UBERON:0014761",
+ "name": "spinal trigeminal tract"
+ },
+ "brain_60": {
+ "term": "UBERON:0007703",
+ "name": "spinothalamic tract"
},
"bolser_5": {
"term": "UBERON:0001649",
"name": "glossopharyngeal nerve"
},
- "bolser_16": {
- "term": "ILX:0738315",
- "name": "Pharyngeal branch of the Hypoglossal nerve"
- },
- "bolser_17": {
- "term": "UBERON:0001884",
- "name": "phrenic nerve"
- },
- "bolser_20": {
- "term": "ILX:0789339",
- "name": "Pharyngeal Branch of Glossopharyngeal Nerve"
- },
- "bolser_22": {
- "term": "UBERON:0009009",
- "name": "carotid sinus nerve"
- },
"keast_1": {
"term": "ILX:0793559",
"name": "bladder nerve"
@@ -1579,158 +1263,14 @@
"term": "UBERON:0018683",
"name": "lumbar splanchnic nerve"
},
- "mawe_1": {
- "term": "UBERON:0005479",
- "name": "superior mesenteric ganglion"
- },
- "ganglion_1": {
- "term": "UBERON:0005364",
- "name": "superior vagus X ganglion"
- },
- "ganglion_2": {
- "term": "UBERON:0005363",
- "name": "inferior vagus X ganglion"
- },
- "ganglion_3": {
- "term": "UBERON:0001989",
- "name": "superior cervical ganglion"
- },
- "ganglion_4": {
- "term": "UBERON:0016508",
- "name": "pelvic ganglion"
- },
- "ganglion_5": {
- "term": "UBERON:0005453",
- "name": "inferior mesenteric ganglion"
- },
- "ganglion_8": {
- "term": "UBERON:0001808",
- "name": "parasympathetic ganglion"
- },
- "ganglion_9": {
- "term": "UBERON:0001990",
- "name": "middle cervical ganglion"
- },
"ganglion_10": {
"term": "UBERON:0002440",
"name": "inferior cervical ganglion"
},
- "ganglion_11": {
- "term": "UBERON:0002441",
- "name": "cervicothoracic ganglion"
- },
- "ganglion_12": {
- "term": "UBERON:0005360",
- "name": "Inferior Glossopharyngeal IX Ganglion"
- },
- "ganglion_13": {
- "term": "ILX:0793555",
- "name": "Atrial Intrinsic Cardiac Ganglion"
- },
- "ganglion_14": {
- "term": "ILX:0793556",
- "name": "Ventricular Intrinsic Cardiac Ganglion"
- },
- "ganglion_15": {
- "term": "ILX:0793570",
- "name": "Trachea Parasympathetic Ganglia"
- },
- "ganglion_16": {
- "term": "ILX:0793571",
- "name": "Bronchus Parasympathetic Ganglia"
- },
- "ganglion_17": {
- "term": "ILX:0793572",
- "name": "Bronchiole Parasympathetic Ganglia"
- },
- "ganglion_18": {
- "term": "ILX:0793573",
- "name": "Terminal Bronchiole Parasympathetic Ganglia"
- },
- "ganglion_19": {
- "term": "ILX:0793082",
- "name": "Celiac Ganglion-Superior Mesenteric Ganglion Complex"
- },
"ganglion_23": {
"term": "UBERON:0001675",
"name": "Trigeminal Ganglion"
},
- "lung_2": {
- "term": "UBERON:0003715",
- "name": "splanchnic nerve"
- },
- "plexus_1": {
- "term": "ILX:0793621",
- "name": "external carotid nerve plexus"
- },
- "plexus_2": {
- "term": "UBERON:0011325",
- "name": "pharyngeal nerve plexus"
- },
- "plexus_3": {
- "term": "ILX:0775776",
- "name": "deep cardiac nerve plexus"
- },
- "plexus_4": {
- "term": "ILX:0775546",
- "name": "anterior pulmonary nerve plexus"
- },
- "plexus_5": {
- "term": "ILX:0793704",
- "name": "esophageal nerve plexus"
- },
- "plexus_7": {
- "term": "UBERON:0002024",
- "name": "internal carotid nerve plexus"
- },
- "plexus_8": {
- "term": "ILX:0793657",
- "name": "Myenteric Nerve Plexus of Descending Colon"
- },
- "plexus_9": {
- "term": "ILX:0793659",
- "name": "Submucous Nerve Plexus of Descending Colon"
- },
- "plexus_10": {
- "term": "ILX:0793656",
- "name": "Myenteric Nerve Plexus of Stomach"
- },
- "plexus_11": {
- "term": "ILX:0793660",
- "name": "Myenteric Nerve Plexus of Lower Esophagus"
- },
- "plexus_12": {
- "term": "ILX:0726846",
- "name": "celiac nerve plexus"
- },
- "plexus_13": {
- "term": "ILX:0776628",
- "name": "posterior pulmonary nerve plexus"
- },
- "plexus_14": {
- "term": "ILX:0773392",
- "name": "superficial cardiac nerve plexus"
- },
- "plexus_15": {
- "term": "ILX:0771304",
- "name": "hepatic nerve plexus"
- },
- "label_4": {
- "term": "UBERON:0002364",
- "name": "tympanic membrane"
- },
- "label_5": {
- "term": "UBERON:0010033",
- "name": "back part of the tongue*"
- },
- "label_6": {
- "term": "UBERON:0006562",
- "name": "pharynx"
- },
- "label_7": {
- "term": "UBERON:0000355",
- "name": "mucosa of pharynx"
- },
"label_8": {
"term": "UBERON:0013165",
"name": "epiglottic vallecula"
@@ -1783,10 +1323,6 @@
"term": "UBERON:0008577",
"name": "vocalis muscle"
},
- "label_23": {
- "term": "ILX:0742928",
- "name": "laryngeal vestibule"
- },
"label_24": {
"term": "ILX:0795059",
"name": "eccrine sweat gland of the upper limb"
@@ -1812,8 +1348,8 @@
"name": "face"
},
"label_30": {
- "term": "UBERON:0000167",
- "name": "oral cavity"
+ "term": "UBERON:0003729",
+ "name": "mouth mucosa"
},
"label_31": {
"term": "UBERON:0001484",
diff --git a/connectivity_terms_female.json b/connectivity_terms_female.json
index d3974a4..f56c8a5 100644
--- a/connectivity_terms_female.json
+++ b/connectivity_terms_female.json
@@ -1,34 +1,4 @@
[
- {
- "id": [
- "UBERON:0007240",
- [
- "UBERON:0000947"
- ]
- ],
- "name": "tunica adventitia of artery/aorta",
- "aliases": [
- [
- "UBERON:0007240",
- [
- "UBERON:0001496"
- ]
- ]
- ]
- },
- {
- "id": [
- "ILX:0738290",
- []
- ],
- "name": "inferior cervical ganglion - middle cervical ganglion interganglionic segment of the sympathetic chain",
- "aliases": [
- [
- "ILX:0739241",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0016578",
@@ -36,7 +6,7 @@
"UBERON:0006457"
]
],
- "name": "",
+ "name": "lamina VII of gray matter of spinal cord / T1 segment of thoracic spinal cord",
"aliases": [
[
"ILX:0738371",
@@ -141,61 +111,30 @@
},
{
"id": [
- "ILX:0793082",
+ "UBERON:0002262",
[]
],
- "name": "celiac ganglion- superior mesenteric ganglion complex",
+ "name": "celiac ganglion",
"aliases": [
- [
- "UBERON:0005488",
- []
- ],
- [
- "UBERON:0002010",
- []
- ],
- [
- "UBERON:0005479",
- []
- ],
- [
- "ILX:0793714",
- []
- ],
- [
- "UBERON:0002262",
- []
- ],
- [
- "UBERON:0035772",
- []
- ],
- [
- "ILX:0794730",
- []
- ],
- [
- "ILX:0794764",
- []
- ],
- [
- "ILX:0793821",
- []
- ],
- [
- "UBERON:0018676",
- []
- ],
[
"ILX:0795513",
[]
],
[
- "ILX:0795514",
+ "ILX:0795515",
[]
- ],
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0005479",
+ []
+ ],
+ "name": "superior mesenteric ganglion",
+ "aliases": [
[
- "ILX:0795515",
+ "ILX:0795514",
[]
],
[
@@ -262,7 +201,7 @@
"UBERON:0006461"
]
],
- "name": "",
+ "name": "lamina IX of gray matter of spinal cord / S2 segment of sacral spinal cord",
"aliases": [
[
"UBERON:0022278",
@@ -270,19 +209,6 @@
]
]
},
- {
- "id": [
- "ILX:0738416",
- []
- ],
- "name": "rhabdosphincter of female",
- "aliases": [
- [
- "UBERON:0004917",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0006459",
@@ -296,19 +222,6 @@
]
]
},
- {
- "id": [
- "ILX:0786141",
- []
- ],
- "name": "fifth thoracic ganglion",
- "aliases": [
- [
- "ILX:0793335",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0006458",
@@ -322,19 +235,6 @@
]
]
},
- {
- "id": [
- "ILX:0789947",
- []
- ],
- "name": "sixth thoracic ganglion",
- "aliases": [
- [
- "ILX:0793336",
- []
- ]
- ]
- },
{
"id": [
"ILX:0787082",
@@ -374,19 +274,6 @@
]
]
},
- {
- "id": [
- "UBERON:0001723",
- []
- ],
- "name": "tongue",
- "aliases": [
- [
- "UBERON:0003729",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0006462",
@@ -494,7 +381,7 @@
"UBERON:0006460",
[]
],
- "name": "S1 segment",
+ "name": "S1 segment of sacral spinal cord",
"aliases": [
[
"ILX:0793878",
@@ -571,7 +458,7 @@
"UBERON:0006467",
[]
],
- "name": "",
+ "name": "T11 segment of thoracic spinal cord",
"aliases": [
[
"ILX:0793815",
@@ -606,10 +493,6 @@
[
"ILX:0793818",
[]
- ],
- [
- "UBERON:0007716",
- []
]
]
},
@@ -654,12 +537,12 @@
},
{
"id": [
- "UBERON:0011776",
+ "UBERON:0004677",
[
"UBERON:0006450"
]
],
- "name": "dorsal commissural nucleus/second lumbar spinal cord segment",
+ "name": "Spinal cord gray commissure/second lumbar spinal cord segment",
"aliases": [
[
"ILX:0793883",
@@ -669,12 +552,12 @@
},
{
"id": [
- "UBERON:0011776",
+ "UBERON:0004677",
[
"UBERON:0006448"
]
],
- "name": "dorsal commissural nucleus/first lumbar spinal cord segment",
+ "name": "Spinal cord gray commissure/first lumbar spinal cord segment",
"aliases": [
[
"ILX:0793882",
@@ -684,10 +567,10 @@
},
{
"id": [
- "UBERON:0000995",
+ "UBERON:0002493",
[]
],
- "name": "uterus",
+ "name": "uterine artery",
"aliases": [
[
"UBERON:0015173",
@@ -772,36 +655,6 @@
]
]
},
- {
- "id": [
- "ILX:0793644",
- [
- "UBERON:0001158"
- ]
- ],
- "name": "Arteriole in Myenteric Nerve Plexus of Descending Colon/descending colon",
- "aliases": [
- [
- "ILX:0793657",
- [
- "UBERON:0001158"
- ]
- ]
- ]
- },
- {
- "id": [
- "UBERON:0018680",
- []
- ],
- "name": "greater splanchnic nerve",
- "aliases": [
- [
- "UBERON:0018679",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0001964",
@@ -817,57 +670,38 @@
},
{
"id": [
- "UBERON:0002113",
+ "UBERON:0002303",
[]
],
- "name": "kidney",
+ "name": "juxtaglomerular apparatus",
"aliases": [
- [
- "UBERON:0009773",
- []
- ],
[
"UBERON:0004639",
[]
],
- [
- "UBERON:0002303",
- []
- ],
[
"UBERON:0004640",
[]
],
- [
- "UBERON:0001224",
- []
- ],
- [
- "UBERON:0003517",
- []
- ],
[
"UBERON:0001230",
[]
],
- [
- "UBERON:0005006",
- []
- ],
- [
- "UBERON:0001225",
- []
- ],
[
"UBERON:0006853",
[]
- ],
- [
- "UBERON:0006851",
- []
- ],
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0001224",
+ []
+ ],
+ "name": "renal pelvis",
+ "aliases": [
[
- "ILX:0795056",
+ "UBERON:0005006",
[]
]
]
@@ -877,7 +711,7 @@
"UBERON:0005363",
[]
],
- "name": "",
+ "name": "inferior vagus X ganglion",
"aliases": [
[
"ILX:0790316",
@@ -899,47 +733,14 @@
[
"UBERON:0004820",
[]
- ]
- ]
- },
- {
- "id": [
- "UBERON:0002107",
- []
- ],
- "name": "liver",
- "aliases": [
- [
- "UBERON:0001281",
- []
- ],
- [
- "UBERON:0006729",
- []
- ],
- [
- "UBERON:0004647",
- []
- ],
- [
- "UBERON:0001172",
- []
],
[
"ILX:0795016",
[]
],
- [
- "ILX:0795010",
- []
- ],
[
"UBERON:0015423",
[]
- ],
- [
- "UBERON:0001279",
- []
]
]
},
@@ -998,44 +799,21 @@
"name": "vagus nerve",
"aliases": [
[
- "ILX:0790553",
- []
- ],
- [
- "ILX:0794142",
- []
- ],
- [
- "ILX:0793826",
- []
- ],
- [
- "ILX:0794141",
- []
- ],
- [
- "ILX:0794506",
- []
- ],
- [
- "ILX:0793827",
- []
- ],
- [
- "ILX:0789580",
+ "UBERON:0003535",
[]
- ],
+ ]
+ ]
+ },
+ {
+ "id": [
+ "ILX:0794473",
+ []
+ ],
+ "name": "abdominal branch of vagus nerve",
+ "aliases": [
[
"ILX:0794476",
[]
- ],
- [
- "ILX:0794853",
- []
- ],
- [
- "UBERON:0003535",
- []
]
]
},
@@ -1149,7 +927,7 @@
[]
],
"name": "renal artery",
- "aliases":[
+ "aliases": [
[
"ILX:0795058",
[]
@@ -1277,15 +1055,24 @@
},
{
"id": [
- "ILX:0793658",
+ "UBERON:0001160",
[]
],
- "name": "Proximal stomach",
+ "name": "Fundus of stomach",
"aliases": [
[
"UBERON:0005477",
[]
- ],
+ ]
+ ]
+ },
+ {
+ "id": [
+ "ILX:0793658",
+ []
+ ],
+ "name": "Proximal stomach",
+ "aliases": [
[
"UBERON:0001161",
[]
@@ -1343,5 +1130,43 @@
[]
]
]
+ },
+ {
+ "id": [
+ "UBERON:0006470",
+ []
+ ],
+ "name": "eight cervical spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0797431",
+ []
+ ],
+ [
+ "UBERON:0016578",
+ [
+ "UBERON:0006470"
+ ]
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0011380",
+ []
+ ],
+ "name": "female external urether",
+ "aliases": [
+ [
+ "ILX:0793141",
+ [
+ "UBERON:0000057"
+ ]
+ ],
+ [
+ "UBERON:0004919",
+ []
+ ]
+ ]
}
]
diff --git a/connectivity_terms_male.json b/connectivity_terms_male.json
index b55c37f..850979a 100644
--- a/connectivity_terms_male.json
+++ b/connectivity_terms_male.json
@@ -1,17 +1,4 @@
[
- {
- "id": [
- "ILX:0738290",
- []
- ],
- "name": "inferior cervical ganglion - middle cervical ganglion interganglionic segment of the sympathetic chain",
- "aliases": [
- [
- "ILX:0739241",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0016578",
@@ -19,7 +6,7 @@
"UBERON:0006457"
]
],
- "name": "",
+ "name": "lamina VII of gray matter of spinal cord / T1 segment of thoracic spinal cord",
"aliases": [
[
"ILX:0738371",
@@ -124,61 +111,30 @@
},
{
"id": [
- "ILX:0793082",
+ "UBERON:0002262",
[]
],
- "name": "celiac ganglion- superior mesenteric ganglion complex",
+ "name": "celiac ganglion",
"aliases": [
- [
- "UBERON:0005488",
- []
- ],
- [
- "UBERON:0002010",
- []
- ],
- [
- "UBERON:0005479",
- []
- ],
- [
- "ILX:0793714",
- []
- ],
- [
- "UBERON:0002262",
- []
- ],
- [
- "UBERON:0035772",
- []
- ],
- [
- "ILX:0794730",
- []
- ],
- [
- "ILX:0794764",
- []
- ],
- [
- "ILX:0793821",
- []
- ],
- [
- "UBERON:0018676",
- []
- ],
[
"ILX:0795513",
[]
],
[
- "ILX:0795514",
+ "ILX:0795515",
[]
- ],
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0005479",
+ []
+ ],
+ "name": "superior mesenteric ganglion",
+ "aliases": [
[
- "ILX:0795515",
+ "ILX:0795514",
[]
],
[
@@ -245,7 +201,7 @@
"UBERON:0006461"
]
],
- "name": "",
+ "name": "lamina IX of gray matter of spinal cord / S2 segment of sacral spinal cord",
"aliases": [
[
"UBERON:0022278",
@@ -253,32 +209,6 @@
]
]
},
- {
- "id": [
- "ILX:0738408",
- []
- ],
- "name": "rhabdosphincter of male",
- "aliases": [
- [
- "UBERON:0004917",
- []
- ]
- ]
- },
- {
- "id": [
- "ILX:0789947",
- []
- ],
- "name": "sixth thoracic ganglion",
- "aliases": [
- [
- "ILX:0793336",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0006458",
@@ -305,19 +235,6 @@
]
]
},
- {
- "id": [
- "ILX:0786141",
- []
- ],
- "name": "fifth thoracic ganglion",
- "aliases": [
- [
- "ILX:0793335",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0006452",
@@ -370,19 +287,6 @@
]
]
},
- {
- "id": [
- "UBERON:0001723",
- []
- ],
- "name": "tongue",
- "aliases": [
- [
- "UBERON:0003729",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0006461",
@@ -447,7 +351,7 @@
"UBERON:0006460",
[]
],
- "name": "",
+ "name": "S1 segment of sacral spinal cord",
"aliases": [
[
"ILX:0793878",
@@ -580,7 +484,7 @@
"UBERON:0006467",
[]
],
- "name": "",
+ "name": "T11 segment of thoracic spinal cord",
"aliases": [
[
"ILX:0793815",
@@ -590,12 +494,12 @@
},
{
"id": [
- "UBERON:0011776",
+ "UBERON:0004677",
[
"UBERON:0006450"
]
],
- "name": "dorsal commissural nucleus/second lumbar spinal cord segment",
+ "name": "Spinal cord gray commissure/second lumbar spinal cord segment",
"aliases": [
[
"ILX:0793883",
@@ -605,12 +509,12 @@
},
{
"id": [
- "UBERON:0011776",
+ "UBERON:0004677",
[
"UBERON:0006448"
]
],
- "name": "dorsal commissural nucleus/first lumbar spinal cord segment",
+ "name": "Spinal cord gray commissure/first lumbar spinal cord segment",
"aliases": [
[
"ILX:0793882",
@@ -645,10 +549,6 @@
[
"ILX:0793818",
[]
- ],
- [
- "UBERON:0007716",
- []
]
]
},
@@ -716,19 +616,6 @@
]
]
},
- {
- "id": [
- "UBERON:0018680",
- []
- ],
- "name": "greater splanchnic nerve",
- "aliases": [
- [
- "UBERON:0018679",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0001964",
@@ -744,126 +631,74 @@
},
{
"id": [
- "UBERON:0002113",
+ "UBERON:0002303",
[]
],
- "name": "kidney",
+ "name": "juxtaglomerular apparatus",
"aliases": [
- [
- "UBERON:0009773",
- []
- ],
[
"UBERON:0004639",
[]
],
- [
- "UBERON:0002303",
- []
- ],
[
"UBERON:0004640",
[]
],
- [
- "UBERON:0001224",
- []
- ],
- [
- "UBERON:0003517",
- []
- ],
[
"UBERON:0001230",
[]
],
- [
- "UBERON:0005006",
- []
- ],
- [
- "UBERON:0001225",
- []
- ],
[
"UBERON:0006853",
[]
- ],
- [
- "UBERON:0006851",
- []
- ],
- [
- "ILX:0795056",
- []
]
]
},
{
"id": [
- "UBERON:0005363",
+ "UBERON:0001224",
[]
],
- "name": "",
+ "name": "renal pelvis",
"aliases": [
[
- "ILX:0790316",
- []
- ],
- [
- "ILX:0792433",
+ "UBERON:0005006",
[]
]
]
},
{
"id": [
- "UBERON:0002394",
+ "UBERON:0005363",
[]
],
- "name": "bile duct",
+ "name": "inferior vagus X ganglion",
"aliases": [
[
- "UBERON:0004820",
+ "ILX:0790316",
[]
],
[
- "UBERON:0001279",
+ "ILX:0792433",
[]
]
]
},
{
"id": [
- "UBERON:0002107",
+ "UBERON:0002394",
[]
],
- "name": "liver",
+ "name": "bile duct",
"aliases": [
[
- "UBERON:0001281",
- []
- ],
- [
- "UBERON:0006729",
- []
- ],
- [
- "UBERON:0004647",
- []
- ],
- [
- "UBERON:0001172",
+ "UBERON:0004820",
[]
],
[
"ILX:0795016",
[]
],
- [
- "ILX:0795010",
- []
- ],
[
"UBERON:0015423",
[]
@@ -925,44 +760,21 @@
"name": "vagus nerve",
"aliases": [
[
- "ILX:0790553",
- []
- ],
- [
- "ILX:0794142",
- []
- ],
- [
- "ILX:0793826",
- []
- ],
- [
- "ILX:0794141",
- []
- ],
- [
- "ILX:0794506",
- []
- ],
- [
- "ILX:0793827",
- []
- ],
- [
- "ILX:0789580",
+ "UBERON:0003535",
[]
- ],
+ ]
+ ]
+ },
+ {
+ "id": [
+ "ILX:0794473",
+ []
+ ],
+ "name": "abdominal branch of vagus nerve",
+ "aliases": [
[
"ILX:0794476",
[]
- ],
- [
- "ILX:0794853",
- []
- ],
- [
- "UBERON:0003535",
- []
]
]
},
@@ -1076,7 +888,7 @@
[]
],
"name": "renal artery",
- "aliases":[
+ "aliases": [
[
"ILX:0795058",
[]
@@ -1217,15 +1029,24 @@
},
{
"id": [
- "ILX:0793658",
+ "UBERON:0001160",
[]
],
- "name": "Proximal stomach",
+ "name": "Fundus of stomach",
"aliases": [
[
"UBERON:0005477",
[]
- ],
+ ]
+ ]
+ },
+ {
+ "id": [
+ "ILX:0793658",
+ []
+ ],
+ "name": "Proximal stomach",
+ "aliases": [
[
"UBERON:0001161",
[]
@@ -1283,5 +1104,43 @@
[]
]
]
+ },
+ {
+ "id": [
+ "UBERON:0006470",
+ []
+ ],
+ "name": "eight cervical spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0797431",
+ []
+ ],
+ [
+ "UBERON:0016578",
+ [
+ "UBERON:0006470"
+ ]
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0011379",
+ []
+ ],
+ "name": "male external urether",
+ "aliases": [
+ [
+ "ILX:0793141",
+ [
+ "UBERON:0000057"
+ ]
+ ],
+ [
+ "UBERON:0004919",
+ []
+ ]
+ ]
}
]
diff --git a/human_flatmap_female.svg b/human_flatmap_female.svg
index 5fef6b9..f0674b7 100644
--- a/human_flatmap_female.svg
+++ b/human_flatmap_female.svg
@@ -1340,12 +1340,15 @@