I'm a PhD student hoping to use this software! I installed through docker (docker run -it andersenlab/vcf-kit vk). Then I tried to run the hmm command and got a "Error [my vcf file name] does not exist". I entered interactive mode (docker run -dit andersenlab/vcf-kit ; docker exec -it [container id] /bin/bash) to try and run vcf-kit interactively to see if I could get a more informative error message, then got this error:
(base) root@f172fe56e9ab:/# vk hmm -h Traceback (most recent call last): File "/opt/conda/envs/vcf-kit/lib/python3.7/site-packages/vcfkit/hmm.py", line 26, in <module> import pomegranate ModuleNotFoundError: No module named 'pomegranate' (base) root@f172fe56e9ab:/#
It seems like there is a module that is not installed? I would love any help you can offer with resolving this issue. Thanks!!
I'm a PhD student hoping to use this software! I installed through docker (docker run -it andersenlab/vcf-kit vk). Then I tried to run the hmm command and got a "Error [my vcf file name] does not exist". I entered interactive mode (docker run -dit andersenlab/vcf-kit ; docker exec -it [container id] /bin/bash) to try and run vcf-kit interactively to see if I could get a more informative error message, then got this error:
(base) root@f172fe56e9ab:/# vk hmm -h Traceback (most recent call last): File "/opt/conda/envs/vcf-kit/lib/python3.7/site-packages/vcfkit/hmm.py", line 26, in <module> import pomegranate ModuleNotFoundError: No module named 'pomegranate' (base) root@f172fe56e9ab:/#It seems like there is a module that is not installed? I would love any help you can offer with resolving this issue. Thanks!!