diff --git a/cases/validate_zarr/v0.6/core/invalid/image/duplicate_axes.ome.zarr/0/zarr.json b/cases/validate_zarr/v0.6/core/invalid/image/duplicate_axes.ome.zarr/0/zarr.json new file mode 100644 index 0000000..063aa40 --- /dev/null +++ b/cases/validate_zarr/v0.6/core/invalid/image/duplicate_axes.ome.zarr/0/zarr.json @@ -0,0 +1,28 @@ +{ + "attributes": {}, + "chunk_grid": { + "configuration": { + "chunk_shape": [ + 10, + 10 + ] + }, + "name": "regular" + }, + "chunk_key_encoding": { + "name": "default" + }, + "codecs": [ + { + "name": "bytes" + } + ], + "data_type": "uint8", + "fill_value": 0, + "node_type": "array", + "shape": [ + 10, + 10 + ], + "zarr_format": 3 +} diff --git a/cases/validate_zarr/v0.6/core/invalid/image/duplicate_scale.ome.zarr/0/zarr.json b/cases/validate_zarr/v0.6/core/invalid/image/duplicate_scale.ome.zarr/0/zarr.json new file mode 100644 index 0000000..063aa40 --- /dev/null +++ b/cases/validate_zarr/v0.6/core/invalid/image/duplicate_scale.ome.zarr/0/zarr.json @@ -0,0 +1,28 @@ +{ + "attributes": {}, + "chunk_grid": { + "configuration": { + "chunk_shape": [ + 10, + 10 + ] + }, + "name": "regular" + }, + "chunk_key_encoding": { + "name": "default" + }, + "codecs": [ + { + "name": "bytes" + } + ], + "data_type": "uint8", + "fill_value": 0, + "node_type": "array", + "shape": [ + 10, + 10 + ], + "zarr_format": 3 +} diff --git a/cases/validate_zarr/v0.6/core/invalid/image/empty_transformations.ome.zarr/0/zarr.json b/cases/validate_zarr/v0.6/core/invalid/image/empty_transformations.ome.zarr/0/zarr.json new file mode 100644 index 0000000..063aa40 --- /dev/null +++ b/cases/validate_zarr/v0.6/core/invalid/image/empty_transformations.ome.zarr/0/zarr.json @@ -0,0 +1,28 @@ +{ + "attributes": {}, + "chunk_grid": { + "configuration": { + "chunk_shape": [ + 10, + 10 + ] + }, + "name": "regular" + }, + "chunk_key_encoding": { + "name": "default" + }, + "codecs": [ + { + "name": "bytes" + } + ], + "data_type": "uint8", + "fill_value": 0, + "node_type": "array", + "shape": [ + 10, + 10 + ], + "zarr_format": 3 +} diff --git a/cases/validate_zarr/v0.6/core/invalid/image/invalid_axes_count.ome.zarr/0/zarr.json b/cases/validate_zarr/v0.6/core/invalid/image/invalid_axes_count.ome.zarr/0/zarr.json new file mode 100644 index 0000000..ec8ef62 --- /dev/null +++ b/cases/validate_zarr/v0.6/core/invalid/image/invalid_axes_count.ome.zarr/0/zarr.json @@ -0,0 +1,26 @@ +{ + "attributes": {}, + "chunk_grid": { + "configuration": { + "chunk_shape": [ + 10 + ] + }, + "name": "regular" + }, + "chunk_key_encoding": { + "name": "default" + }, + "codecs": [ + { + "name": "bytes" + } + ], + "data_type": "uint8", + "fill_value": 0, + "node_type": "array", + "shape": [ + 10 + ], + "zarr_format": 3 +} diff --git a/cases/validate_zarr/v0.6/core/invalid/image/invalid_axis_type.ome.zarr/0/zarr.json b/cases/validate_zarr/v0.6/core/invalid/image/invalid_axis_type.ome.zarr/0/zarr.json new file mode 100644 index 0000000..063aa40 --- /dev/null +++ b/cases/validate_zarr/v0.6/core/invalid/image/invalid_axis_type.ome.zarr/0/zarr.json @@ -0,0 +1,28 @@ +{ + "attributes": {}, + "chunk_grid": { + "configuration": { + "chunk_shape": [ + 10, + 10 + ] + }, + "name": "regular" + }, + "chunk_key_encoding": { + "name": "default" + }, + "codecs": [ + { + "name": "bytes" + } + ], + "data_type": "uint8", + "fill_value": 0, + "node_type": "array", + "shape": [ + 10, + 10 + ], + "zarr_format": 3 +} diff --git a/cases/validate_zarr/v0.6/core/invalid/image/invalid_channels_color.ome.zarr/0/zarr.json b/cases/validate_zarr/v0.6/core/invalid/image/invalid_channels_color.ome.zarr/0/zarr.json new file mode 100644 index 0000000..063aa40 --- /dev/null +++ b/cases/validate_zarr/v0.6/core/invalid/image/invalid_channels_color.ome.zarr/0/zarr.json @@ -0,0 +1,28 @@ +{ + "attributes": {}, + "chunk_grid": { + "configuration": { + "chunk_shape": [ + 10, + 10 + ] + }, + "name": "regular" + }, + "chunk_key_encoding": { + "name": "default" + }, + "codecs": [ + { + "name": "bytes" + } + ], + "data_type": "uint8", + "fill_value": 0, + "node_type": "array", + "shape": [ + 10, + 10 + ], + "zarr_format": 3 +} diff --git a/cases/validate_zarr/v0.6/core/invalid/image/invalid_channels_window.ome.zarr/0/zarr.json b/cases/validate_zarr/v0.6/core/invalid/image/invalid_channels_window.ome.zarr/0/zarr.json new file mode 100644 index 0000000..063aa40 --- /dev/null +++ b/cases/validate_zarr/v0.6/core/invalid/image/invalid_channels_window.ome.zarr/0/zarr.json @@ -0,0 +1,28 @@ +{ + "attributes": {}, + "chunk_grid": { + "configuration": { + "chunk_shape": [ + 10, + 10 + ] + }, + "name": "regular" + }, + "chunk_key_encoding": { + "name": "default" + }, + "codecs": [ + { + "name": "bytes" + } + ], + "data_type": "uint8", + "fill_value": 0, + "node_type": "array", + "shape": [ + 10, + 10 + ], + "zarr_format": 3 +} diff --git a/cases/validate_zarr/v0.6/core/invalid/image/invalid_multiscales_transformations.ome.zarr/0/zarr.json b/cases/validate_zarr/v0.6/core/invalid/image/invalid_multiscales_transformations.ome.zarr/0/zarr.json new file mode 100644 index 0000000..063aa40 --- /dev/null +++ b/cases/validate_zarr/v0.6/core/invalid/image/invalid_multiscales_transformations.ome.zarr/0/zarr.json @@ -0,0 +1,28 @@ +{ + "attributes": {}, + "chunk_grid": { + "configuration": { + "chunk_shape": [ + 10, + 10 + ] + }, + "name": "regular" + }, + "chunk_key_encoding": { + "name": "default" + }, + "codecs": [ + { + "name": "bytes" + } + ], + "data_type": "uint8", + "fill_value": 0, + "node_type": "array", + "shape": [ + 10, + 10 + ], + "zarr_format": 3 +} diff --git a/cases/validate_zarr/v0.6/core/invalid/image/invalid_path.ome.zarr/0/zarr.json b/cases/validate_zarr/v0.6/core/invalid/image/invalid_path.ome.zarr/0/zarr.json new file mode 100644 index 0000000..063aa40 --- /dev/null +++ b/cases/validate_zarr/v0.6/core/invalid/image/invalid_path.ome.zarr/0/zarr.json @@ -0,0 +1,28 @@ +{ + "attributes": {}, + "chunk_grid": { + "configuration": { + "chunk_shape": [ + 10, + 10 + ] + }, + "name": "regular" + }, + "chunk_key_encoding": { + "name": "default" + }, + "codecs": [ + { + "name": "bytes" + } + ], + "data_type": "uint8", + "fill_value": 0, + "node_type": "array", + "shape": [ + 10, + 10 + ], + "zarr_format": 3 +} diff --git a/cases/validate_zarr/v0.6/core/invalid/image/invalid_transformation_type.ome.zarr/0/zarr.json b/cases/validate_zarr/v0.6/core/invalid/image/invalid_transformation_type.ome.zarr/0/zarr.json new file mode 100644 index 0000000..063aa40 --- /dev/null +++ b/cases/validate_zarr/v0.6/core/invalid/image/invalid_transformation_type.ome.zarr/0/zarr.json @@ -0,0 +1,28 @@ +{ + "attributes": {}, + "chunk_grid": { + "configuration": { + "chunk_shape": [ + 10, + 10 + ] + }, + "name": "regular" + }, + "chunk_key_encoding": { + "name": "default" + }, + "codecs": [ + { + "name": "bytes" + } + ], + "data_type": "uint8", + "fill_value": 0, + "node_type": "array", + "shape": [ + 10, + 10 + ], + "zarr_format": 3 +} diff --git a/cases/validate_zarr/v0.6/core/invalid/image/missing_axes.ome.zarr/0/zarr.json b/cases/validate_zarr/v0.6/core/invalid/image/missing_axes.ome.zarr/0/zarr.json new file mode 100644 index 0000000..063aa40 --- /dev/null +++ b/cases/validate_zarr/v0.6/core/invalid/image/missing_axes.ome.zarr/0/zarr.json @@ -0,0 +1,28 @@ +{ + "attributes": {}, + "chunk_grid": { + "configuration": { + "chunk_shape": [ + 10, + 10 + ] + }, + "name": "regular" + }, + "chunk_key_encoding": { + "name": "default" + }, + "codecs": [ + { + "name": "bytes" + } + ], + "data_type": "uint8", + "fill_value": 0, + "node_type": "array", + "shape": [ + 10, + 10 + ], + "zarr_format": 3 +} diff --git a/cases/validate_zarr/v0.6/core/invalid/image/missing_axes_name.ome.zarr/0/zarr.json b/cases/validate_zarr/v0.6/core/invalid/image/missing_axes_name.ome.zarr/0/zarr.json new file mode 100644 index 0000000..063aa40 --- /dev/null +++ b/cases/validate_zarr/v0.6/core/invalid/image/missing_axes_name.ome.zarr/0/zarr.json @@ -0,0 +1,28 @@ +{ + "attributes": {}, + "chunk_grid": { + "configuration": { + "chunk_shape": [ + 10, + 10 + ] + }, + "name": "regular" + }, + "chunk_key_encoding": { + "name": "default" + }, + "codecs": [ + { + "name": "bytes" + } + ], + "data_type": "uint8", + "fill_value": 0, + "node_type": "array", + "shape": [ + 10, + 10 + ], + "zarr_format": 3 +} diff --git a/cases/validate_zarr/v0.6/core/invalid/image/missing_path.ome.zarr/0/zarr.json b/cases/validate_zarr/v0.6/core/invalid/image/missing_path.ome.zarr/0/zarr.json new file mode 100644 index 0000000..063aa40 --- /dev/null +++ b/cases/validate_zarr/v0.6/core/invalid/image/missing_path.ome.zarr/0/zarr.json @@ -0,0 +1,28 @@ +{ + "attributes": {}, + "chunk_grid": { + "configuration": { + "chunk_shape": [ + 10, + 10 + ] + }, + "name": "regular" + }, + "chunk_key_encoding": { + "name": "default" + }, + "codecs": [ + { + "name": "bytes" + } + ], + "data_type": "uint8", + "fill_value": 0, + "node_type": "array", + "shape": [ + 10, + 10 + ], + "zarr_format": 3 +} diff --git a/cases/validate_zarr/v0.6/core/invalid/image/missing_scale.ome.zarr/0/zarr.json b/cases/validate_zarr/v0.6/core/invalid/image/missing_scale.ome.zarr/0/zarr.json new file mode 100644 index 0000000..063aa40 --- /dev/null +++ b/cases/validate_zarr/v0.6/core/invalid/image/missing_scale.ome.zarr/0/zarr.json @@ -0,0 +1,28 @@ +{ + "attributes": {}, + "chunk_grid": { + "configuration": { + "chunk_shape": [ + 10, + 10 + ] + }, + "name": "regular" + }, + "chunk_key_encoding": { + "name": "default" + }, + "codecs": [ + { + "name": "bytes" + } + ], + "data_type": "uint8", + "fill_value": 0, + "node_type": "array", + "shape": [ + 10, + 10 + ], + "zarr_format": 3 +} diff --git a/cases/validate_zarr/v0.6/core/invalid/image/missing_space_axes.ome.zarr/0/zarr.json b/cases/validate_zarr/v0.6/core/invalid/image/missing_space_axes.ome.zarr/0/zarr.json new file mode 100644 index 0000000..063aa40 --- /dev/null +++ b/cases/validate_zarr/v0.6/core/invalid/image/missing_space_axes.ome.zarr/0/zarr.json @@ -0,0 +1,28 @@ +{ + "attributes": {}, + "chunk_grid": { + "configuration": { + "chunk_shape": [ + 10, + 10 + ] + }, + "name": "regular" + }, + "chunk_key_encoding": { + "name": "default" + }, + "codecs": [ + { + "name": "bytes" + } + ], + "data_type": "uint8", + "fill_value": 0, + "node_type": "array", + "shape": [ + 10, + 10 + ], + "zarr_format": 3 +} diff --git a/cases/validate_zarr/v0.6/core/invalid/image/missing_transformations.ome.zarr/0/zarr.json b/cases/validate_zarr/v0.6/core/invalid/image/missing_transformations.ome.zarr/0/zarr.json new file mode 100644 index 0000000..063aa40 --- /dev/null +++ b/cases/validate_zarr/v0.6/core/invalid/image/missing_transformations.ome.zarr/0/zarr.json @@ -0,0 +1,28 @@ +{ + "attributes": {}, + "chunk_grid": { + "configuration": { + "chunk_shape": [ + 10, + 10 + ] + }, + "name": "regular" + }, + "chunk_key_encoding": { + "name": "default" + }, + "codecs": [ + { + "name": "bytes" + } + ], + "data_type": "uint8", + "fill_value": 0, + "node_type": "array", + "shape": [ + 10, + 10 + ], + "zarr_format": 3 +} diff --git a/cases/validate_zarr/v0.6/core/invalid/image/no_axes.ome.zarr/0/zarr.json b/cases/validate_zarr/v0.6/core/invalid/image/no_axes.ome.zarr/0/zarr.json new file mode 100644 index 0000000..fec9e44 --- /dev/null +++ b/cases/validate_zarr/v0.6/core/invalid/image/no_axes.ome.zarr/0/zarr.json @@ -0,0 +1,22 @@ +{ + "attributes": {}, + "chunk_grid": { + "configuration": { + "chunk_shape": [] + }, + "name": "regular" + }, + "chunk_key_encoding": { + "name": "default" + }, + "codecs": [ + { + "name": "bytes" + } + ], + "data_type": "uint8", + "fill_value": 0, + "node_type": "array", + "shape": [], + "zarr_format": 3 +} diff --git a/cases/validate_zarr/v0.6/core/invalid/image/one_space_axes.ome.zarr/0/zarr.json b/cases/validate_zarr/v0.6/core/invalid/image/one_space_axes.ome.zarr/0/zarr.json new file mode 100644 index 0000000..f4be758 --- /dev/null +++ b/cases/validate_zarr/v0.6/core/invalid/image/one_space_axes.ome.zarr/0/zarr.json @@ -0,0 +1,30 @@ +{ + "attributes": {}, + "chunk_grid": { + "configuration": { + "chunk_shape": [ + 10, + 10, + 10 + ] + }, + "name": "regular" + }, + "chunk_key_encoding": { + "name": "default" + }, + "codecs": [ + { + "name": "bytes" + } + ], + "data_type": "uint8", + "fill_value": 0, + "node_type": "array", + "shape": [ + 10, + 10, + 10 + ], + "zarr_format": 3 +} diff --git a/cases/validate_zarr/v0.6/core/invalid/image/too_many_axes.ome.zarr/0/zarr.json b/cases/validate_zarr/v0.6/core/invalid/image/too_many_axes.ome.zarr/0/zarr.json new file mode 100644 index 0000000..cf288fb --- /dev/null +++ b/cases/validate_zarr/v0.6/core/invalid/image/too_many_axes.ome.zarr/0/zarr.json @@ -0,0 +1,36 @@ +{ + "attributes": {}, + "chunk_grid": { + "configuration": { + "chunk_shape": [ + 10, + 10, + 10, + 10, + 10, + 10 + ] + }, + "name": "regular" + }, + "chunk_key_encoding": { + "name": "default" + }, + "codecs": [ + { + "name": "bytes" + } + ], + "data_type": "uint8", + "fill_value": 0, + "node_type": "array", + "shape": [ + 10, + 10, + 10, + 10, + 10, + 10 + ], + "zarr_format": 3 +} diff --git a/cases/validate_zarr/v0.6/core/invalid/image/too_many_space_axes.ome.zarr/0/zarr.json b/cases/validate_zarr/v0.6/core/invalid/image/too_many_space_axes.ome.zarr/0/zarr.json new file mode 100644 index 0000000..2890669 --- /dev/null +++ b/cases/validate_zarr/v0.6/core/invalid/image/too_many_space_axes.ome.zarr/0/zarr.json @@ -0,0 +1,32 @@ +{ + "attributes": {}, + "chunk_grid": { + "configuration": { + "chunk_shape": [ + 10, + 10, + 10, + 10 + ] + }, + "name": "regular" + }, + "chunk_key_encoding": { + "name": "default" + }, + "codecs": [ + { + "name": "bytes" + } + ], + "data_type": "uint8", + "fill_value": 0, + "node_type": "array", + "shape": [ + 10, + 10, + 10, + 10 + ], + "zarr_format": 3 +} diff --git a/cases/validate_zarr/v0.6/core/valid/image/custom_type_axes.ome.zarr/0/zarr.json b/cases/validate_zarr/v0.6/core/valid/image/custom_type_axes.ome.zarr/0/zarr.json new file mode 100644 index 0000000..997a6b9 --- /dev/null +++ b/cases/validate_zarr/v0.6/core/valid/image/custom_type_axes.ome.zarr/0/zarr.json @@ -0,0 +1,30 @@ +{ + "attributes": {}, + "chunk_grid": { + "configuration": { + "chunk_shape": [ + 3, + 10, + 10 + ] + }, + "name": "regular" + }, + "chunk_key_encoding": { + "name": "default" + }, + "codecs": [ + { + "name": "bytes" + } + ], + "data_type": "uint8", + "fill_value": 0, + "node_type": "array", + "shape": [ + 3, + 10, + 10 + ], + "zarr_format": 3 +} diff --git a/cases/validate_zarr/v0.6/core/valid/image/invalid_axis_units.ome.zarr/0/zarr.json b/cases/validate_zarr/v0.6/core/valid/image/invalid_axis_units.ome.zarr/0/zarr.json new file mode 100644 index 0000000..063aa40 --- /dev/null +++ b/cases/validate_zarr/v0.6/core/valid/image/invalid_axis_units.ome.zarr/0/zarr.json @@ -0,0 +1,28 @@ +{ + "attributes": {}, + "chunk_grid": { + "configuration": { + "chunk_shape": [ + 10, + 10 + ] + }, + "name": "regular" + }, + "chunk_key_encoding": { + "name": "default" + }, + "codecs": [ + { + "name": "bytes" + } + ], + "data_type": "uint8", + "fill_value": 0, + "node_type": "array", + "shape": [ + 10, + 10 + ], + "zarr_format": 3 +} diff --git a/cases/validate_zarr/v0.6/core/valid/image/mismatch_axes_units.ome.zarr/0/zarr.json b/cases/validate_zarr/v0.6/core/valid/image/mismatch_axes_units.ome.zarr/0/zarr.json new file mode 100644 index 0000000..f4be758 --- /dev/null +++ b/cases/validate_zarr/v0.6/core/valid/image/mismatch_axes_units.ome.zarr/0/zarr.json @@ -0,0 +1,30 @@ +{ + "attributes": {}, + "chunk_grid": { + "configuration": { + "chunk_shape": [ + 10, + 10, + 10 + ] + }, + "name": "regular" + }, + "chunk_key_encoding": { + "name": "default" + }, + "codecs": [ + { + "name": "bytes" + } + ], + "data_type": "uint8", + "fill_value": 0, + "node_type": "array", + "shape": [ + 10, + 10, + 10 + ], + "zarr_format": 3 +} diff --git a/cases/validate_zarr/v0.6/core/valid/image/missing_name.ome.zarr/0/zarr.json b/cases/validate_zarr/v0.6/core/valid/image/missing_name.ome.zarr/0/zarr.json new file mode 100644 index 0000000..063aa40 --- /dev/null +++ b/cases/validate_zarr/v0.6/core/valid/image/missing_name.ome.zarr/0/zarr.json @@ -0,0 +1,28 @@ +{ + "attributes": {}, + "chunk_grid": { + "configuration": { + "chunk_shape": [ + 10, + 10 + ] + }, + "name": "regular" + }, + "chunk_key_encoding": { + "name": "default" + }, + "codecs": [ + { + "name": "bytes" + } + ], + "data_type": "uint8", + "fill_value": 0, + "node_type": "array", + "shape": [ + 10, + 10 + ], + "zarr_format": 3 +} diff --git a/cases/validate_zarr/v0.6/core/valid/image/missing_name.ome.zarr/zarr.json b/cases/validate_zarr/v0.6/core/valid/image/missing_name.ome.zarr/zarr.json index f7a6cb9..798e0b2 100644 --- a/cases/validate_zarr/v0.6/core/valid/image/missing_name.ome.zarr/zarr.json +++ b/cases/validate_zarr/v0.6/core/valid/image/missing_name.ome.zarr/zarr.json @@ -25,7 +25,7 @@ "coordinateTransformations": [ { "input": { - "path": "path/to/0" + "path": "0" }, "output": { "name": "intrinsic" @@ -37,7 +37,7 @@ "type": "scale" } ], - "path": "path/to/0" + "path": "0" } ], "metadata": { diff --git a/cases/validate_zarr/v0.6/core/valid/image/untyped_axes.ome.zarr/0/zarr.json b/cases/validate_zarr/v0.6/core/valid/image/untyped_axes.ome.zarr/0/zarr.json new file mode 100644 index 0000000..f4be758 --- /dev/null +++ b/cases/validate_zarr/v0.6/core/valid/image/untyped_axes.ome.zarr/0/zarr.json @@ -0,0 +1,30 @@ +{ + "attributes": {}, + "chunk_grid": { + "configuration": { + "chunk_shape": [ + 10, + 10, + 10 + ] + }, + "name": "regular" + }, + "chunk_key_encoding": { + "name": "default" + }, + "codecs": [ + { + "name": "bytes" + } + ], + "data_type": "uint8", + "fill_value": 0, + "node_type": "array", + "shape": [ + 10, + 10, + 10 + ], + "zarr_format": 3 +} diff --git a/cases/validate_zarr/v0.6/strict/invalid/label/no_colors.ome.zarr/zarr.json b/cases/validate_zarr/v0.6/strict/invalid/label/no_colors.ome.zarr/zarr.json deleted file mode 100644 index f430eea..0000000 --- a/cases/validate_zarr/v0.6/strict/invalid/label/no_colors.ome.zarr/zarr.json +++ /dev/null @@ -1,10 +0,0 @@ -{ - "attributes": { - "ome": { - "image-label": {}, - "version": "0.6" - } - }, - "node_type": "group", - "zarr_format": 3 -} diff --git a/cases/validate_zarr/v0.6/strict/invalid/plate/missing_acquisition_maximumfieldcount.ome.zarr/zarr.json b/cases/validate_zarr/v0.6/strict/invalid/plate/missing_acquisition_maximumfieldcount.ome.zarr/zarr.json deleted file mode 100644 index 362ebe8..0000000 --- a/cases/validate_zarr/v0.6/strict/invalid/plate/missing_acquisition_maximumfieldcount.ome.zarr/zarr.json +++ /dev/null @@ -1,35 +0,0 @@ -{ - "attributes": { - "ome": { - "plate": { - "acquisitions": [ - { - "id": 0, - "name": "0" - } - ], - "columns": [ - { - "name": "A" - } - ], - "name": "test plate", - "rows": [ - { - "name": "1" - } - ], - "wells": [ - { - "columnIndex": 0, - "path": "A/1", - "rowIndex": 0 - } - ] - }, - "version": "0.6" - } - }, - "node_type": "group", - "zarr_format": 3 -} diff --git a/cases/validate_zarr/v0.6/strict/invalid/plate/missing_acquisition_name.ome.zarr/zarr.json b/cases/validate_zarr/v0.6/strict/invalid/plate/missing_acquisition_name.ome.zarr/zarr.json deleted file mode 100644 index 1c6747d..0000000 --- a/cases/validate_zarr/v0.6/strict/invalid/plate/missing_acquisition_name.ome.zarr/zarr.json +++ /dev/null @@ -1,35 +0,0 @@ -{ - "attributes": { - "ome": { - "plate": { - "acquisitions": [ - { - "id": 0, - "maximumfieldcount": 1 - } - ], - "columns": [ - { - "name": "A" - } - ], - "name": "test plate", - "rows": [ - { - "name": "1" - } - ], - "wells": [ - { - "columnIndex": 0, - "path": "A/1", - "rowIndex": 0 - } - ] - }, - "version": "0.6" - } - }, - "node_type": "group", - "zarr_format": 3 -} diff --git a/cases/validate_zarr/v0.6/strict/invalid/plate/missing_name.ome.zarr/zarr.json b/cases/validate_zarr/v0.6/strict/invalid/plate/missing_name.ome.zarr/zarr.json deleted file mode 100644 index 2ac9d6e..0000000 --- a/cases/validate_zarr/v0.6/strict/invalid/plate/missing_name.ome.zarr/zarr.json +++ /dev/null @@ -1,28 +0,0 @@ -{ - "attributes": { - "ome": { - "plate": { - "columns": [ - { - "name": "A" - } - ], - "rows": [ - { - "name": "1" - } - ], - "wells": [ - { - "columnIndex": 0, - "path": "A/1", - "rowIndex": 0 - } - ] - }, - "version": "0.6" - } - }, - "node_type": "group", - "zarr_format": 3 -} diff --git a/cases/validate_zarr/v0.6/strict/valid/image/image.ome.zarr/zarr.json b/cases/validate_zarr/v0.6/strict/valid/image/image.ome.zarr/zarr.json deleted file mode 100644 index da1d60d..0000000 --- a/cases/validate_zarr/v0.6/strict/valid/image/image.ome.zarr/zarr.json +++ /dev/null @@ -1,55 +0,0 @@ -{ - "attributes": { - "ome": { - "multiscales": [ - { - "coordinateSystems": [ - { - "axes": [ - { - "name": "y", - "type": "space", - "unit": "micrometer" - }, - { - "name": "x", - "type": "space", - "unit": "micrometer" - } - ], - "name": "physical" - } - ], - "datasets": [ - { - "coordinateTransformations": [ - { - "input": { - "path": "0" - }, - "output": { - "name": "physical" - }, - "scale": [ - 1, - 1 - ], - "type": "scale" - } - ], - "path": "0" - } - ], - "metadata": { - "key": "value" - }, - "name": "simple_image", - "type": "foo" - } - ], - "version": "0.6" - } - }, - "node_type": "group", - "zarr_format": 3 -} diff --git a/cases/validate_zarr/v0.6/strict/valid/image/image_metadata.ome.zarr/zarr.json b/cases/validate_zarr/v0.6/strict/valid/image/image_metadata.ome.zarr/zarr.json deleted file mode 100644 index 6e09fe9..0000000 --- a/cases/validate_zarr/v0.6/strict/valid/image/image_metadata.ome.zarr/zarr.json +++ /dev/null @@ -1,66 +0,0 @@ -{ - "attributes": { - "ome": { - "@id": "top", - "@type": "ngff:Image", - "multiscales": [ - { - "@id": "inner", - "coordinateSystems": [ - { - "axes": [ - { - "name": "y", - "type": "space", - "unit": "micrometer" - }, - { - "name": "x", - "type": "space", - "unit": "micrometer" - } - ], - "name": "physical" - } - ], - "datasets": [ - { - "coordinateTransformations": [ - { - "input": { - "path": "path/to/0" - }, - "output": { - "name": "physical" - }, - "scale": [ - 1, - 1 - ], - "type": "scale" - } - ], - "path": "path/to/0" - } - ], - "metadata": { - "args": [ - "true", - "false" - ], - "kwargs": { - "multichannel": true - }, - "method": "skimage.transform.pyramid_gaussian", - "version": "0.16.1" - }, - "name": "example", - "type": "gaussian" - } - ], - "version": "0.6" - } - }, - "node_type": "group", - "zarr_format": 3 -} diff --git a/cases/validate_zarr/v0.6/strict/valid/image/image_omero.ome.zarr/zarr.json b/cases/validate_zarr/v0.6/strict/valid/image/image_omero.ome.zarr/zarr.json deleted file mode 100644 index 9e75729..0000000 --- a/cases/validate_zarr/v0.6/strict/valid/image/image_omero.ome.zarr/zarr.json +++ /dev/null @@ -1,177 +0,0 @@ -{ - "attributes": { - "ome": { - "multiscales": [ - { - "coordinateSystems": [ - { - "axes": [ - { - "name": "t", - "type": "time" - }, - { - "name": "c", - "type": "channel" - }, - { - "name": "z", - "type": "space", - "unit": "micrometer" - }, - { - "name": "y", - "type": "space", - "unit": "micrometer" - }, - { - "name": "x", - "type": "space", - "unit": "micrometer" - } - ], - "name": "world" - }, - { - "axes": [ - { - "name": "t", - "type": "time" - }, - { - "name": "c", - "type": "channel" - }, - { - "name": "z", - "type": "space", - "unit": "micrometer" - }, - { - "name": "y", - "type": "space", - "unit": "micrometer" - }, - { - "name": "x", - "type": "space", - "unit": "micrometer" - } - ], - "name": "physical" - } - ], - "coordinateTransformations": [ - { - "input": { - "path": "physical" - }, - "output": { - "name": "world" - }, - "translation": [ - 0, - 9, - 0.5, - 25.74, - 21.58 - ], - "type": "translation" - } - ], - "datasets": [ - { - "coordinateTransformations": [ - { - "input": { - "path": "0" - }, - "output": { - "name": "physical" - }, - "scale": [ - 1, - 1, - 0.5, - 0.13, - 0.13 - ], - "type": "scale" - } - ], - "path": "0" - }, - { - "coordinateTransformations": [ - { - "input": { - "path": "1" - }, - "output": { - "name": "physical" - }, - "scale": [ - 1, - 1, - 1, - 0.26, - 0.26 - ], - "type": "scale" - } - ], - "path": "1" - } - ], - "metadata": { - "key": "value" - }, - "name": "image_with_omero_metadata", - "type": "foo" - } - ], - "omero": { - "channels": [ - { - "active": true, - "coefficient": 1.0, - "color": "00FF00", - "family": "linear", - "inverted": false, - "label": "FITC", - "window": { - "end": 813.0, - "max": 870.0, - "min": 102.0, - "start": 82.0 - } - }, - { - "active": true, - "coefficient": 1.0, - "color": "FF0000", - "family": "linear", - "inverted": false, - "label": "RD-TR-PE", - "window": { - "end": 815.0, - "max": 441.0, - "min": 129.0, - "start": 78.0 - } - } - ], - "id": 1, - "rdefs": { - "defaultT": 0, - "defaultZ": 2, - "model": "color" - }, - "version": "0.6rc0" - }, - "version": "0.6" - } - }, - "node_type": "group", - "zarr_format": 3 -} diff --git a/cases/validate_zarr/v0.6/strict/valid/image/multiscales_example.ome.zarr/zarr.json b/cases/validate_zarr/v0.6/strict/valid/image/multiscales_example.ome.zarr/zarr.json deleted file mode 100644 index 95cece9..0000000 --- a/cases/validate_zarr/v0.6/strict/valid/image/multiscales_example.ome.zarr/zarr.json +++ /dev/null @@ -1,167 +0,0 @@ -{ - "attributes": { - "ome": { - "multiscales": [ - { - "coordinateSystems": [ - { - "axes": [ - { - "name": "t", - "type": "time", - "unit": "millisecond" - }, - { - "name": "c", - "type": "channel" - }, - { - "name": "z", - "type": "space", - "unit": "micrometer" - }, - { - "name": "y", - "type": "space", - "unit": "micrometer" - }, - { - "name": "x", - "type": "space", - "unit": "micrometer" - } - ], - "name": "world" - }, - { - "axes": [ - { - "name": "t", - "type": "time", - "unit": "millisecond" - }, - { - "name": "c", - "type": "channel" - }, - { - "name": "z", - "type": "space", - "unit": "micrometer" - }, - { - "name": "y", - "type": "space", - "unit": "micrometer" - }, - { - "name": "x", - "type": "space", - "unit": "micrometer" - } - ], - "name": "intrinsic" - } - ], - "coordinateTransformations": [ - { - "input": { - "name": "world" - }, - "output": { - "name": "intrinsic" - }, - "scale": [ - 0.1, - 1.0, - 1.0, - 1.0, - 1.0 - ], - "type": "scale" - } - ], - "datasets": [ - { - "coordinateTransformations": [ - { - "input": { - "path": "0" - }, - "output": { - "name": "intrinsic" - }, - "scale": [ - 1.0, - 1.0, - 0.5, - 0.5, - 0.5 - ], - "type": "scale" - } - ], - "path": "0" - }, - { - "coordinateTransformations": [ - { - "input": { - "path": "1" - }, - "output": { - "name": "intrinsic" - }, - "scale": [ - 1.0, - 1.0, - 1.0, - 1.0, - 1.0 - ], - "type": "scale" - } - ], - "path": "1" - }, - { - "coordinateTransformations": [ - { - "input": { - "path": "2" - }, - "output": { - "name": "intrinsic" - }, - "scale": [ - 1.0, - 1.0, - 2.0, - 2.0, - 2.0 - ], - "type": "scale" - } - ], - "path": "2" - } - ], - "metadata": { - "args": "[true]", - "description": "the fields in metadata depend on the downscaling implementation. Here, the parameters passed to the skimage function are given", - "kwargs": { - "multichannel": true - }, - "method": "skimage.transform.pyramid_gaussian", - "version": "0.16.1" - }, - "name": "example", - "type": "gaussian" - } - ], - "version": "0.6" - } - }, - "node_type": "group", - "zarr_format": 3 -} diff --git a/cases/validate_zarr/v0.6/strict/valid/image/multiscales_transformations.ome.zarr/zarr.json b/cases/validate_zarr/v0.6/strict/valid/image/multiscales_transformations.ome.zarr/zarr.json deleted file mode 100644 index 5e27c26..0000000 --- a/cases/validate_zarr/v0.6/strict/valid/image/multiscales_transformations.ome.zarr/zarr.json +++ /dev/null @@ -1,85 +0,0 @@ -{ - "attributes": { - "ome": { - "multiscales": [ - { - "coordinateSystems": [ - { - "axes": [ - { - "name": "y", - "type": "space", - "unit": "micrometer" - }, - { - "name": "x", - "type": "space", - "unit": "micrometer" - } - ], - "name": "world" - }, - { - "axes": [ - { - "name": "y", - "type": "space", - "unit": "micrometer" - }, - { - "name": "x", - "type": "space", - "unit": "micrometer" - } - ], - "name": "physical" - } - ], - "coordinateTransformations": [ - { - "input": { - "name": "physical" - }, - "output": { - "name": "world" - }, - "scale": [ - 10, - 10 - ], - "type": "scale" - } - ], - "datasets": [ - { - "coordinateTransformations": [ - { - "input": { - "path": "0" - }, - "output": { - "name": "physical" - }, - "scale": [ - 1, - 1 - ], - "type": "scale" - } - ], - "path": "0" - } - ], - "metadata": { - "key": "value" - }, - "name": "image_with_coordinateTransformations", - "type": "foo" - } - ], - "version": "0.6" - } - }, - "node_type": "group", - "zarr_format": 3 -} diff --git a/cases/validate_zarr/v0.6/strict/valid/plate/strict_acquisitions.ome.zarr/zarr.json b/cases/validate_zarr/v0.6/strict/valid/plate/strict_acquisitions.ome.zarr/zarr.json deleted file mode 100644 index 8263437..0000000 --- a/cases/validate_zarr/v0.6/strict/valid/plate/strict_acquisitions.ome.zarr/zarr.json +++ /dev/null @@ -1,36 +0,0 @@ -{ - "attributes": { - "ome": { - "plate": { - "acquisitions": [ - { - "id": 0, - "maximumfieldcount": 1, - "name": "0" - } - ], - "columns": [ - { - "name": "1" - } - ], - "name": "test plate", - "rows": [ - { - "name": "A" - } - ], - "wells": [ - { - "columnIndex": 0, - "path": "A/1", - "rowIndex": 0 - } - ] - }, - "version": "0.6" - } - }, - "node_type": "group", - "zarr_format": 3 -} diff --git a/cases/validate_zarr/v0.6/strict/valid/plate/strict_no_acquisitions.ome.zarr/zarr.json b/cases/validate_zarr/v0.6/strict/valid/plate/strict_no_acquisitions.ome.zarr/zarr.json deleted file mode 100644 index 958283d..0000000 --- a/cases/validate_zarr/v0.6/strict/valid/plate/strict_no_acquisitions.ome.zarr/zarr.json +++ /dev/null @@ -1,29 +0,0 @@ -{ - "attributes": { - "ome": { - "plate": { - "columns": [ - { - "name": "1" - } - ], - "name": "test plate", - "rows": [ - { - "name": "A" - } - ], - "wells": [ - { - "columnIndex": 0, - "path": "A/1", - "rowIndex": 0 - } - ] - }, - "version": "0.6" - } - }, - "node_type": "group", - "zarr_format": 3 -} diff --git a/cases/validate_zarr/v0.6/strict/valid/well/strict_acquisitions.ome.zarr/zarr.json b/cases/validate_zarr/v0.6/strict/valid/well/strict_acquisitions.ome.zarr/zarr.json deleted file mode 100644 index 0854e0b..0000000 --- a/cases/validate_zarr/v0.6/strict/valid/well/strict_acquisitions.ome.zarr/zarr.json +++ /dev/null @@ -1,17 +0,0 @@ -{ - "attributes": { - "ome": { - "version": "0.6", - "well": { - "images": [ - { - "acquisition": 0, - "path": "0" - } - ] - } - } - }, - "node_type": "group", - "zarr_format": 3 -} diff --git a/cases/validate_zarr/v0.6/strict/valid/well/strict_no_acquisitions.ome.zarr/zarr.json b/cases/validate_zarr/v0.6/strict/valid/well/strict_no_acquisitions.ome.zarr/zarr.json deleted file mode 100644 index 958a53d..0000000 --- a/cases/validate_zarr/v0.6/strict/valid/well/strict_no_acquisitions.ome.zarr/zarr.json +++ /dev/null @@ -1,16 +0,0 @@ -{ - "attributes": { - "ome": { - "version": "0.6", - "well": { - "images": [ - { - "path": "0" - } - ] - } - } - }, - "node_type": "group", - "zarr_format": 3 -}