Summary
When reading CSV data containing YAML metadata using fread(text = ..., yaml = TRUE), the function fails if text is a single character string containing newline characters (\n).
Curiously, if the exact same content is passed as a multi-element character vector (e.g. from capture.output()), fread works as expected.
Minimal Reproducible Example (reprex)
library(data.table)
# 1. Generate YAML-annotated CSV lines
lines_vec <- capture.output(fwrite(head(iris, 2), yaml = TRUE))
# Case A: Multi-element character vector -> WORKS
res_vec <- fread(text = lines_vec, yaml = TRUE)
print(res_vec)
# Case B: Single character string with \n (typical for HTTP responses / file reads) -> FAILS
scalar_text <- paste0(lines_vec, collapse = "\n")
res_scalar <- fread(text = scalar_text, yaml = TRUE)
Output of Case B:
Called from: h(simpleError(msg, call))
Warning message:
In base::file(input, "r") : cannot open file '---
source: R[v4.5.3]::data.table[v1.18.6.1]::fwrite
creation_time_utc: 2026-09-02 14:50:31
schema:
fields:
- name: Sepal.Length
type: numeric
- name: Sepal.Width
type: numeric
- name: Petal.Length
type: numeric
- name: Petal.Width
type: numeric
- name: Species
type: factor
header: yes
sep: ','
sep2:
- ''
- '|'
- ''
eol: |2+
na.strings: ''
dec: '.'
qmethod: double
logical01: no
---
Sepal.Length,Sepal.Width,Petal.Length,Petal.Width,Species
5.1,3.5,1.4,0.2,setosa
4.9,3,1.4,0.2,setosa': No such file or directory
Expected Behaviour
It should behave the same as with yaml = FALSE, for which no error occurs:
lines_vec <- capture.output(fwrite(head(iris, 2), yaml = FALSE))
res_vec <- fread(text = lines_vec, yaml = FALSE)
print(res_vec)
scalar_text <- paste0(lines_vec, collapse = "\n")
res_scalar <- fread(text = scalar_text, yaml = FALSE)
res_scalar
> sessionInfo()
R version 4.5.3 (2026-03-11 ucrt)
Platform: x86_64-w64-mingw32/x64
Running under: Windows 11 x64 (build 26200)
Matrix products: default
LAPACK version 3.12.1
locale:
[1] LC_COLLATE=German_Germany.utf8 LC_CTYPE=German_Germany.utf8
[3] LC_MONETARY=German_Germany.utf8 LC_NUMERIC=C
[5] LC_TIME=German_Germany.utf8
time zone: Europe/Berlin
tzcode source: internal
attached base packages:
[1] stats graphics grDevices utils datasets methods
[7] base
other attached packages:
[1] data.table_1.18.6.1
loaded via a namespace (and not attached):
[1] compiler_4.5.3 cli_3.6.6 tools_4.5.3 yaml_2.3.12
Summary
When reading CSV data containing YAML metadata using
fread(text = ..., yaml = TRUE), the function fails iftextis a single character string containing newline characters (\n).Curiously, if the exact same content is passed as a multi-element character vector (e.g. from
capture.output()),freadworks as expected.Minimal Reproducible Example (reprex)
Output of Case B:
Expected Behaviour
It should behave the same as with yaml = FALSE, for which no error occurs: