Issues

• Specify output file

  ccpem/affinity-vae#319 · Filter by author theredgeek opened on Aug 21, 2026

• Save statistics as plain text

  ccpem/affinity-vae#318 · Filter by author theredgeek opened on Aug 21, 2026

• Save latent space statistics

  ccpem/affinity-vae#317 · Filter by author theredgeek opened on Aug 21, 2026

• Save val_recon_in as .mrc

  ccpem/affinity-vae#316 · Filter by author theredgeek opened on Aug 21, 2026

• Classifier LR error.

  ccpem/affinity-vae#314 · Filter by author moi-taiga opened on Jul 4, 2025
  1

• Affinity matrix visualisation fails with matplotlib 3.9.0

  bug
  ccpem/affinity-vae#312 · Filter by author jolaem opened on Jun 5, 2024
  

• Improve README

  documentation
  ccpem/affinity-vae#306 · Filter by author crangelsmith opened on Apr 17, 2024

• Consider binarizing the weights in the splat decoder

  ccpem/affinity-vae#302 · Filter by author quantumjot opened on Mar 7, 2024
  1

• Refactoring of the codebase

  enhancement
  ccpem/affinity-vae#296 · Filter by author crangelsmith opened on Mar 1, 2024
  

• Add tests for the pipeline and the model containing Gaussian splat decoder

  ccpem/affinity-vae#281 · Filter by author marjanfamili opened on Jan 10, 2024

• Evaluation should check if data dimension is compatible with model

  bug
  ccpem/affinity-vae#267 · Filter by author jolaem opened on Dec 11, 2023

• Consolidate embedding code

  ccpem/affinity-vae#244 · Filter by author jolaem opened on Oct 27, 2023

• selection of encodings for pose and latent interpolation

  ccpem/affinity-vae#236 · Filter by author marjanfamili opened on Oct 23, 2023

• remove white space from reconstruction plots

  ccpem/affinity-vae#160 · Filter by author marjanfamili opened on Jul 17, 2023
  1

• strip spaces from the name of classes in affinity.csv or classes.csv

  good first issuepriority
  ccpem/affinity-vae#156 · Filter by author marjanfamili opened on Jul 13, 2023
  3

  

• Refactor evaluation during training (call function from eval rather than test_dir)

  bug
  ccpem/affinity-vae#115 · Filter by author marjanfamili opened on May 16, 2023

• creating read the docs

  bug
  ccpem/affinity-vae#108 · Filter by author marjanfamili opened on May 12, 2023
  

• Prevent users from leaving a trailing comma at the end of the classes.csv file

  good first issuepriority
  ccpem/affinity-vae#63 · Filter by author crangelsmith opened on Apr 24, 2023
  

• Add functions for calculating affinity matrix (both SOAP and FSC)

  enhancement
  ccpem/affinity-vae#32 · Filter by author jolaem opened on Apr 19, 2023
  1

• Update the method of metadata gathering from pandas to Cudf (cuda df)

  priority
  ccpem/affinity-vae#22 · Filter by author marjanfamili opened on Apr 17, 2023

• Add to pypi / make a conda package

  ccpem/affinity-vae#11 · Filter by author quantumjot opened on Dec 8, 2022

• Add a contributing guide

  documentationgood first issue
  ccpem/affinity-vae#10 · Filter by author quantumjot opened on Dec 8, 2022

• Can we move to an Apache v2 licence

  ccpem/affinity-vae#7 · Filter by author markbasham opened on Dec 1, 2022
  1