Issues

• Parakeet does not generate uniformly sampled poses

  bug
  Bug

  ccpem/roodmus#56 · Filter by author MJoosten opened on Jul 28, 2026

• Ice thickness variation

  enhancement
  Feature

  ccpem/roodmus#55 · Filter by author MJoosten opened on Jul 3, 2026
  

• Check beam-induced motion model

  ccpem/roodmus#52 · Filter by author MJoosten opened on May 11, 2026
  3

• solvent noise model

  ccpem/roodmus#51 · Filter by author MJoosten opened on Mar 23, 2026
  1

• BIM model incompatible with atomic ice generation

  bugv0.3.0
  Bug

  ccpem/roodmus#48 · Filter by author MJoosten opened on May 12, 2025
  

• Non-uniform placement of particles in the virtual sample

  enhancement
  Feature

  ccpem/roodmus#46 · Filter by author MJoosten opened on May 8, 2025
  2

• Improved parallelization with mpi

  enhancement
  Feature

  ccpem/roodmus#45 · Filter by author MJoosten opened on May 8, 2025

• Updating roodmus to use parakeet v0.6.X

  ccpem/roodmus#44 · Filter by author JatGreer opened on Mar 5, 2025
  17

• Sort out het_metrics.log file

  enhancementv0.3.0
  ccpem/roodmus#37 · Filter by author JatGreer opened on Mar 13, 2024
  1

  

• Setup sphinx docs

  documentationv0.3.0
  ccpem/roodmus#35 · Filter by author JatGreer opened on Mar 6, 2024
  2

  

• integration test for heterogeneity module

  enhancementv0.3.0
  ccpem/roodmus#33 · Filter by author MJoosten opened on Mar 6, 2024
  

• plot_ctf incorrect CTF

  bugv0.3.0
  ccpem/roodmus#31 · Filter by author MJoosten opened on Feb 29, 2024
  1

  

• Roodmus v0.3.0 utilities

  ccpem/roodmus#28 · Filter by author JatGreer opened on Feb 21, 2024

• Parameters for noisy, radiation damaged, inelastic scattering-inclusive, fractionated dataset generation

  ccpem/roodmus#26 · Filter by author JatGreer opened on Feb 21, 2024

• inelastic scattering models

  understanding Parakeet
  ccpem/roodmus#23 · Filter by author JatGreer opened on Feb 20, 2024 · More complete understanding of Parakeet implementation (with source code)

• MTF generation and e-/A^2/second dependence in implementation (also relation to DQE)

  understanding Parakeet
  ccpem/roodmus#22 · Filter by author JatGreer opened on Feb 20, 2024 · More complete understanding of Parakeet implementation (with source code)

• CTF simulation

  understanding Parakeet
  ccpem/roodmus#21 · Filter by author JatGreer opened on Feb 20, 2024 · More complete understanding of Parakeet implementation (with source code)

• Generation of the simulated Gaussian random field (GRF) ice model

  understanding Parakeet
  ccpem/roodmus#19 · Filter by author JatGreer opened on Feb 20, 2024 · More complete understanding of Parakeet implementation (with source code)
  3

• Add analysis tests for per-particle defoci and 1-to-1 matching labelling

  ccpem/roodmus#17 · Filter by author JatGreer opened on Nov 28, 2023
  

• Refactor num_ugraphs to be implemented within analysis object. This resolves unnecessary matching of particles in all ugraphs in a metadata file.

  enhancementv0.3.0
  ccpem/roodmus#16 · Filter by author JatGreer opened on Nov 28, 2023
  

• add .cff file (for easy citation) with doi to repo

  ccpem/roodmus#15 · Filter by author JatGreer opened on Nov 28, 2023
  

• add CONTRIBUTING.md to repo

  ccpem/roodmus#14 · Filter by author JatGreer opened on Nov 28, 2023
  

• Update plot formatting

  v0.3.0
  ccpem/roodmus#12 · Filter by author JatGreer opened on Nov 28, 2023
  1

  

• Look into cisTEM for micrograph simulation

  enhancementwontfix
  ccpem/roodmus#11 · Filter by author JatGreer opened on Nov 28, 2023
  5

• Particle distribution in micrographs

  bugunderstanding Parakeetv0.3.0
  ccpem/roodmus#7 · Filter by author JatGreer opened on Nov 28, 2023
  1