Issues

• how to get the supplementary alignment

  isovic/graphmap#105 · Filter by author WellJoea opened on Nov 15, 2020

• ascii to 2 bit encoding

  isovic/graphmap#103 · Filter by author harisankarsadasivan opened on Apr 15, 2019

• Could you please let me know how to build index for say 10 bacterial genomes in graphmap? I understand how it is to be done for 1 genome.

  isovic/graphmap#102 · Filter by author harisankarsadasivan opened on Mar 9, 2019

• Is graphmap better than Minimap2 for ONT 1D R9.4.1 reads?

  isovic/graphmap#101 · Filter by author harisankarsadasivan opened on Jan 3, 2019

• Alternative alignment algorithms fail assertion

  isovic/graphmap#100 · Filter by author kevinxchan opened on Dec 3, 2018
  2

• Please tag releases with git tags

  isovic/graphmap#99 · Filter by author alanorth opened on Nov 4, 2018
  1

• Error installing GraphMap

  isovic/graphmap#97 · Filter by author Serratia opened on Aug 4, 2018

• Not able to install Graphmap ?

  isovic/graphmap#96 · Filter by author pinninti19 opened on Aug 2, 2018
  2

• multicore performance issue

  isovic/graphmap#95 · Filter by author ramcn opened on Jul 31, 2018

• Failed replicate the lambda alignment from the graphmap publication

  isovic/graphmap#94 · Filter by author Shengpei-Luke-Chen opened on Jul 19, 2018

• Error with graphmap installation

  isovic/graphmap#93 · Filter by author herrroaa opened on Jul 17, 2018
  2

• GraphMap ONT parameters

  isovic/graphmap#92 · Filter by author npavlovikj opened on Jun 1, 2018
  2

• MD:Z SAM file tag error: Reference sequence cross-contamination

  isovic/graphmap#90 · Filter by author meyermj opened on May 10, 2018

• Duplicate entries in sam header

  isovic/graphmap#88 · Filter by author fgypas opened on Apr 23, 2018

• Question: graphmap align pacbio data

  isovic/graphmap#87 · Filter by author zwm0502 opened on Mar 9, 2018

• Does GraphMap consider hard-clipping?

  isovic/graphmap#86 · Filter by author npavlovikj opened on Feb 22, 2018

• Question: "-C" parameter when several closed bacterial contigs?

  isovic/graphmap#85 · Filter by author ghost opened on Feb 7, 2018

• std::bad_alloc when using "-a anchorgotoh"

  isovic/graphmap#84 · Filter by author ghost opened on Nov 29, 2017
  1

• Failure to Map

  isovic/graphmap#83 · Filter by author YianniL opened on Nov 29, 2017
  1

• How to change mapping parameters when dealing with highly repetitive region

  isovic/graphmap#82 · Filter by author ghost opened on Nov 28, 2017

• issues building graphmaps on Centos

  isovic/graphmap#81 · Filter by author rmontagn opened on Nov 13, 2017

• Provide switches --version and -v

  isovic/graphmap#80 · Filter by author paulmenzel opened on Sep 22, 2017

• Use HTTPS URL in GitHub description

  isovic/graphmap#79 · Filter by author paulmenzel opened on Sep 22, 2017

• Issue when using --no-end2end

  isovic/graphmap#78 · Filter by author awjga opened on Sep 14, 2017
  1

• graphmap spliced alpha: no spliced alignments reported

  isovic/graphmap#76 · Filter by author aechchiki opened on Aug 23, 2017
  2