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<!DOCTYPE html>
<!--
Welcome to ePlant, a unique data visualization tool for integrating and exploring multiple levels of biological data.
This project was produced in Nicholas Provart's lab in the department of Cell & Systems Biology, University of Toronto.
Design & UI by Jamie Waese
Code by Hans Yu
It is based on an earlier version of ePlant by Nicholas Provart: http://bar.utoronto.ca/eplant/
-->
<html>
<head>
<meta http-equiv="content-type" content="text/html; charset=utf-8" />
<title>ePlant</title>
<meta name="keywords" content="" />
<!--[if lt IE 9]>
<script type="text/javascript">alert("Sorry but your browser does not support the canvas tag. Try using a recent version of Firefox, Chrome or Safari.");</script>
<![endif]-->
<script src="//ajax.googleapis.com/ajax/libs/jquery/1.10.2/jquery.min.js"></script>
<script src="//ajax.googleapis.com/ajax/libs/jqueryui/1.10.3/jquery-ui.min.js"></script>
<script type="text/javascript" src="lib/spectrum/spectrum.js"></script>
<link rel="stylesheet" href="lib/spectrum/spectrum.css"></link>
<link rel="stylesheet" href="//ajax.googleapis.com/ajax/libs/jqueryui/1.10.3/themes/smoothness/jquery-ui.min.css"></link>
<script type="text/javascript" src="lib/JSmol/JSmol.min.nojq.js"></script>
<script type="text/javascript" src="lib/JSmol/JSmolThree.js"></script>
<script type="text/javascript" src="lib/JSmol/JSmolGLmol.js"></script>
<script type="text/javascript" src="lib/cytoscape/cytoscape.min.js"></script>
<script type="text/javascript" src="lib/cytoscape/arbor.js"></script>
<script type="text/javascript" src="https://maps.googleapis.com/maps/api/js?key=AIzaSyDT2IJLsslEC94ECmcXlAvz9ukPRH0fbh0&sensor=false"></script>
<script type="text/javascript" src="lib/GMaps/infobox_packed.js"></script>
<script type="text/javascript" src="lib/OverlappingMarkerSpiderfier/oms.min.js"></script>
<script type="text/javascript" src="lib/dalliance/dalliance-compiled.js"></script>
<script type="text/javascript" src="lib/html2canvas/html2canvas.js"></script>
<!-- Tooltip Pop-Up Stylesheet. (From: https://github.com/chinchang/hint.css) -->
<link rel="stylesheet" href="lib/hint/hint.css"></link>
<!-- Google Analytics -->
<script type="text/javascript">
var _gaq = _gaq || [];
_gaq.push(['_setAccount', 'UA-44555001-1']);
_gaq.push(['_trackPageview']);
(function() {
var ga = document.createElement('script');
ga.type = 'text/javascript';
ga.async = true;
ga.src = ('https:' == document.location.protocol ? 'https://ssl' : 'http://www') + '.google-analytics.com/ga.js';
var s = document.getElementsByTagName('script')[0];
s.parentNode.insertBefore(ga, s);
})();
</script>
<!-- Facebook Like Button -->
<!-- CSS -->
<link rel="stylesheet" href="style/eplant.css"></link>
</head>
<body>
<div id="content">
<!-- Title strip -->
<table width="90%">
<tr>
<!-- BAR logo -->
<td width="227px" style="text-align:center;">
<div class="hint--right hint--success hint--rounded" data-hint="See more bio visualization tools at the BAR." data-enabled="true">
<a href='http://bar.utoronto.ca'><img id="logo" src='img/BAR.png' alt='To the Bio-Array Resource Homepage' align="absmiddle" style="position:relative;left:-4px;"></a>
</div>
</td>
<!-- ePlant title & species name -->
<td width="460px">
<span id="logoText">ePlant </span>
<span id="speciesLabel" class="hiddenInSpeciesView">
<!-- Plant name should update when user changes species -->
</span>
</td>
<!-- Enter Gene ID box -->
<td width="284px">
<div id="enter_geneID_box" class="hiddenInSpeciesView">
<!-- text box -->
<input id="enterIdentifier" type="text" name="GeneID" value="Enter gene ID or alias" onfocus="inputFocus(this)" onblur="inputBlur(this)">
<!-- Get Data button -->
<div class="hint--left hint--success hint--rounded" data-hint="Download all available data for this gene" data-enabled="true">
<input type="button" id="queryIdentifier" class="button" value="Get Data">
</div>
</div>
</td>
<!-- Save / Load buttons -->
<td>
<div style="float: left;padding-top:6px;">
<div class="hint--left hint--success hint--rounded" data-hint="Save your work session" data-enabled="true"><input type="button" id="saveSession" class="button" value="Save"/></div>
<div class="hint--left hint--success hint--rounded" data-hint="Load a previously saved session" data-enabled="true"><input type="button" id="loadSession" class="button" value="Load"></div>
</div>
</td>
<!-- Example button -->
<td>
<div style="float: left;padding-top:6px;">
<div class="hint--left hint--success hint--rounded hiddenInSpeciesView" data-hint="Example" data-enabled="true">
<input id="getExample" type="button" class="button" value="Example"/>
</div>
</div>
</td>
</tr>
</table>
<!-- Application contents -->
<table style="padding:20px 0 0 0;">
<tr>
<td valign="top">
<!-- Icon Dock -->
<div id="navigationContainer" class="hiddenInSpeciesView">
</div>
</td>
<td valign="top">
<div id="pageCurlBoxShadow">
<div id="ZUI_container">
<div id="Cytoscape_container" style="width:900px;height:600px;position:absolute;left:0;top:0;opacity:0.99;">
</div>
<div id="JSmol_container" style="width:900px;height:600px;position:absolute;left:0;top:0;opacity:0.99;">
</div>
<div id="map_container" style="width:900px;height:600px;position:absolute;left:0;top:0;opacity:0.99;visibility:hidden;">
</div>
<div id="dalliance_container" style="width:900px;height:600px;position:absolute;left:0;top:0;opacity:0.99;visibility:hidden;">
</div>
<canvas id="ZUI_canvas" width="900px" height="600px" style="position:absolute;left:0;top:0;outline:none;">
Canvas is not supported by your browser, please upgrade.
</canvas>
</div>
</div>
<div id="settings_container" class="hiddenInSpeciesView">
<table>
<tr>
<td id="viewSpecificUI">
</td>
<td id="crossViewUI">
<div id="historyBackIcon" class="iconSmall hint--top hint--success hint--rounded" data-hint="Go back to the previous view" data-enabled="true" style="padding-right:0;width:20px;height:25px;">
<img src="img/available/history-back.png" style="width:20px;height:20px;"></img>
</div>
<div id="historyIcon" class="iconSmall hint--top hint--success hint--rounded" data-hint="History panel" data-enabled="true" style="padding-left:0;padding-right:0;">
<img src="img/history.png"></img>
</div>
<div id="historyForwardIcon" class="iconSmall hint--top hint--success hint--rounded" data-hint="Go forward to the next view" data-enabled="true" style="padding-left:0;width:20px;height:25px;">
<img src="img/available/history-forward.png" style="width:20px;height:20px;"></img>
</div>
<div id="viewChangeAnimationIcon" class="iconSmall hint--top hint--success hint--rounded" data-hint="Toggle zooming animation" data-enabled="true">
<img src="img/on/zoom.png"></img>
</div>
<div id="tooltipIcon" class="iconSmall hint--top hint--success hint--rounded" data-hint="Toggle tooltip" data-enabled="true">
<img src="img/on/tooltip.png"></img>
</div>
<div id="getImageIcon" class="iconSmall hint--top hint--success hint--rounded" data-hint="Save current screen as high resolution image" data-enabled="true">
<img src="img/getimage.png"></img>
</div>
<div id="citationIcon" class="iconSmall hint--top hint--success hint--rounded" data-hint="Get citation" data-enabled="true">
<img src="img/citation.png"></img>
</div>
<div id="removeDialogsIcon" class="iconSmall hint--top hint--success hint--rounded" data-hint="Remove all dialogs" data-enabled="true">
<img src="img/removedialogs.png"></img>
</div>
</td>
</tr>
</table>
</div>
</td>
<td valign="top">
<div id="genePanel_container" class="hiddenInSpeciesView">
<span id="genePanel_label">Currently loaded genes:</span>
<div id="genePanel_content">
</div>
</div>
</td>
</tr>
</table>
<script type="text/javascript" src="lib/zui/zui.js"></script>
<script type="text/javascript" src="src/Eplant.js"></script>
<script type="text/javascript" src="src/Eplant.Views.js"></script>
<script type="text/javascript" src="src/Eplant.Color.js"></script>
<script type="text/javascript" src="src/Eplant.View.js"></script>
<script type="text/javascript" src="src/Eplant.BaseViews.js"></script>
<script type="text/javascript" src="src/Eplant.Species.js"></script>
<script type="text/javascript" src="src/Eplant.Chromosome.js"></script>
<script type="text/javascript" src="src/Eplant.GeneticElement.js"></script>
<script type="text/javascript" src="src/Eplant.GeneticElement.AnnotationTag.js"></script>
<script type="text/javascript" src="src/Eplant.GeneticElementDialog.js"></script>
<script type="text/javascript" src="src/Eplant.GeneticElementDialog.AnnotationTag.js"></script>
<script type="text/javascript" src="src/Eplant.ViewSpecificUIButton.js"></script>
<script type="text/javascript" src="src/Eplant.Tooltip.js"></script>
<script type="text/javascript" src="src/Eplant.History.js"></script>
<script type="text/javascript" src="src/Eplant.History.Item.js"></script>
<script type="text/javascript" src="src/Eplant.HistoryDialog.js"></script>
<script type="text/javascript" src="src/Eplant.BaseViews/EFPView/Eplant.BaseViews.EFPView.js"></script>
<script type="text/javascript" src="src/Eplant.BaseViews/EFPView/Eplant.BaseViews.EFPView.Legend.js"></script>
<script type="text/javascript" src="src/Eplant.BaseViews/EFPView/Eplant.BaseViews.EFPView.CompareDialog.js"></script>
<script type="text/javascript" src="src/Eplant.BaseViews/EFPView/Eplant.BaseViews.EFPView.MaskDialog.js"></script>
<script type="text/javascript" src="src/Eplant.BaseViews/EFPView/Eplant.BaseViews.EFPView.PaletteDialog.js"></script>
<script type="text/javascript" src="src/Eplant.Views/SpeciesView/Eplant.Views.SpeciesView.js"></script>
<script type="text/javascript" src="src/Eplant.Views/SpeciesView/Eplant.Views.SpeciesView.SelectList.js"></script>
<script type="text/javascript" src="src/Eplant.Views/SpeciesView/Eplant.Views.SpeciesView.SelectList.Choice.js"></script>
<script type="text/javascript" src="src/Eplant.Views/WorldView/Eplant.Views.WorldView.js"></script>
<script type="text/javascript" src="src/Eplant.Views/PlantView/Eplant.Views.PlantView.js"></script>
<script type="text/javascript" src="src/Eplant.Views/CellView/Eplant.Views.CellView.js"></script>
<script type="text/javascript" src="src/Eplant.Views/ChromosomeView/Eplant.Views.ChromosomeView.js"></script>
<script type="text/javascript" src="src/Eplant.Views/ChromosomeView/Eplant.Views.ChromosomeView.Chromosome.js"></script>
<script type="text/javascript" src="src/Eplant.Views/ChromosomeView/Eplant.Views.ChromosomeView.GeneticElementList.js"></script>
<script type="text/javascript" src="src/Eplant.Views/ChromosomeView/Eplant.Views.ChromosomeView.GeneticElementList.Choice.js"></script>
<script type="text/javascript" src="src/Eplant.Views/ChromosomeView/Eplant.Views.ChromosomeView.Annotation.js"></script>
<script type="text/javascript" src="src/Eplant.Views/ChromosomeView/Eplant.Views.ChromosomeView.AnnotateDialog.js"></script>
<script type="text/javascript" src="src/Eplant.Views/ChromosomeView/Eplant.Views.ChromosomeView.AnnotateDialog.AnnotationTag.js"></script>
<script type="text/javascript" src="src/Eplant.Views/InteractionView/Eplant.Views.InteractionView.js"></script>
<script type="text/javascript" src="src/Eplant.Views/InteractionView/Eplant.Views.InteractionView.Annotation.js"></script>
<script type="text/javascript" src="src/Eplant.Views/InteractionView/Eplant.Views.InteractionView.Legend.js"></script>
<script type="text/javascript" src="src/Eplant.Views/InteractionView/Eplant.Views.InteractionView.FilterDialog.js"></script>
<script type="text/javascript" src="src/Eplant.Views/MoleculeView/Eplant.Views.MoleculeView.js"></script>
<script type="text/javascript" src="src/Eplant.Views/SequenceView/Eplant.Views.SequenceView.js"></script>
<script type="text/javascript">
Eplant.initialize();
</script>
</div>
<!-- Tabs -->
<br>
<script src="lib/tabcontent/tabcontent.js" type="text/javascript"></script>
<link href="lib/tabcontent/tabcontent-template2/tabcontent.css" rel="stylesheet" type="text/css"></link>
<div id="tabs">
<ul class="tabs" data-persist="true">
<li><a href="#view1">Welcome</a></li>
<li><a href="#view2">Background</a></li>
<li><a href="#view3">Instructions</a></li>
<li><a href="#view4">Data Sources</a></li>
<li><a href="#view5">Example Gallery</a></li>
<li><a href="#view6">Contact</a></li>
</ul>
<div class="tabcontents" style="background:#fff;">
<div id="view1" style="margin-left:20%;margin-right:20%;">
</div>
<div id="view2" style="margin-left:20%;margin-right:20%;">
</div>
<div id="view3" style="margin-left:20%;margin-right:20%;">
</div>
<div id="view4" style="margin-left:20%;margin-right:20%;">
</div>
<div id="view5" style="margin-left:20%;margin-right:20%;">
</div>
<div id="view6" style="margin-left:20%;margin-right:20%;">
</div>
</div>
<!-- soil & grass footer -->
<div id="greenBottom">
<!-- back to top button: http://webdesign.tutsplus.com/tutorials/htmlcss-tutorials/quick-tip-implement-a-sticky-back-to-top-button/ -->
<a href="#" class="back-top">Go to top</a>
<script type="text/javascript">
$(document).ready(function() {
// Show or hide the back-top button
$(window).scroll(function() {
if ($(this).scrollTop() > 200) {
$('.back-top').fadeIn(800);
} else {
$('.back-top').fadeOut(800);
}
});
// animate the scroll to top
$('.back-top').click(function(event) {
event.preventDefault();
$('html, body').animate({scrollTop: 0}, 300)
});
});
</script>
</div>
<!-- open close max/min buttons -->
<script type="text/javascript">
function tabViewsOnLoad(response) {
tabViewLoadCounter--;
if (tabViewLoadCounter == 0) {
$(".maxMinButton").click(function(){
if($(this).html() == "-"){
$(this).html("+");
}
else{
$(this).html("-");
}
$(this).parent().parent().children(".maxMinBox").slideToggle();
});
$(".maxMinBox").slideToggle();
}
}
var tabViewLoadCounter = 6;
$("#view1").load("welcome.html", tabViewsOnLoad);
$("#view2").load("background.html", tabViewsOnLoad);
$("#view3").load("instructions.html", tabViewsOnLoad);
$("#view4").load("data-sources.html", tabViewsOnLoad);
$("#view5").load("example-gallery.html", tabViewsOnLoad);
$("#view6").load("contact.html", tabViewsOnLoad);
</script>
<!-- Preload Text in selection box -->
<script type="text/javascript">
function inputFocus(i){
if(i.value==i.defaultValue){ i.value=""; i.style.color="#000"; }
}
function inputBlur(i){
if(i.value==""){ i.value=i.defaultValue; i.style.color="#666"; }
}
</script>
<script type="text/javascript">
function getExample() {
if (ZUI.activeView instanceof SpeciesView) {
alert("Please choose a plant first!");
return;
}
var map = {
"Arabidopsis thaliana": "ABI3, ABI5"
};
for (key in map) {
if (Eplant.speciesOfFocus.species.scientificName == key) {
document.getElementById("enterIdentifier").value = map[key];
break;
}
}
}
</script>
</div>
</body>
</html>