diff --git a/CURATOR-REPORT.md b/CURATOR-REPORT.md index 3573d12b..ddeee210 100644 --- a/CURATOR-REPORT.md +++ b/CURATOR-REPORT.md @@ -14,6 +14,82 @@ saves us guessing. Last updated: 2026-09-20 +## Answers to the 19 September round + +Everything you marked in purple on the report, answered. Where I could check it +I did, and I say which; where I could not, I say that instead of guessing. + +### Right-click in the diagram — it works, and it is your trackpad + +Two of you reported no right-click menu, one noting "I use the touch pad +though". That is almost certainly it. Driven on beta against +`R-HSA-1368108`, a right-click on an entity opens the panel: 354x213 pixels, +positioned over the diagram, carrying the entity name and the Molecule / +Pathways / Interactors entries. + +A trackpad sends no right-click at all unless secondary click is switched on. +On a Mac that is **System Settings -> Trackpad -> Secondary click**, or hold +**Ctrl** and click. On Windows, a two-finger tap. + +If it still does nothing with Ctrl held, tell us, because then it is ours. + +### Still open, and we agree with you + +- **Which components of a complex or set are hit** — you said on 19 Sept you + still cannot see this in the diagram. #154 is open. The analysis _table_ can + flag each hit, which is the workaround you found; showing it on the complex + itself is the request ([#154](https://github.com/reactome/WebsiteAngular/issues/154)). +- **Hit reaction count is one off**, which moves FDR and the entity ratios + ([#296](https://github.com/reactome/WebsiteAngular/issues/296)). The most + serious thing in the round, because every other finding is something being + hard to see and this one is a number being wrong. It needs the slide you + referenced, or any analysis token and the pathway where the count differs. +- **PPTX granularity** — entities move now, but an icon's border and centre are + separate shapes, and each reaction line segment moves alone. Partially fixed + is a fair description ([#299](https://github.com/reactome/WebsiteAngular/issues/299)) — the fix is grouping each entity's parts, not fewer shapes. +- **EHLD hover highlight** — hovering a subpathway in the hierarchy highlights + it on the live site and not here ([#297](https://github.com/reactome/WebsiteAngular/issues/297)). +- **Trivial molecules at zoom** — H2O and H+ still disappear when zooming out, + which contradicts the OK on that row ([#298](https://github.com/reactome/WebsiteAngular/issues/298)). We will take yours. + +### Questions you asked + +- _"Do you mean search for something in the diagram?"_ — yes. Type in the + diagram's search box, then flag the result. +- _"How do you opt to download the figure rather than the EHLD?"_ — a fair + question and we do not think the panel makes it clear. Treating it as a bug + in the panel rather than something to explain. +- _"Will we know a GIF or PPTX failed, or must we open it?"_ — for **GIF and + PPTX**, you will know: those come from the render service, which builds the + whole file before it answers, and the page saves nothing unless the whole of + it arrived. A failure is an error on screen and no file. + + **Not true of every format**, and the difference is worth knowing. **SBML, + SBGN and PDF** come from the Java exporters, which stream while they + generate: a failure partway produces a **truncated file that looks + complete**, with no size known in advance to check against. Those are the + ones to open and verify. + + An earlier draft of this answer said "if a file arrives, it was produced", + full stop. That is right for the two you asked about and wrong for the other + three, which is the worse half to get wrong — so it is corrected rather than + left for somebody to trust. + +- _"I did not see an option to convert to editable shapes"_ — there is none to + find. PPTX shapes are already editable when the file opens; nothing needs + switching on. + +### Fixed since you last looked + +- **A searched entity being deselected when you navigate within a diagram** + (#168). Fixed. `select` was being overwritten with the pathway you were + leaving, so your own selection was discarded on one of the two ways out of a + diagram and kept on the other. +- **An error thrown when deleting a custom interactor resource** (#231). +- If you write a test URL by hand, the flag parameter is `flag=`. `FLG=` also + works. `flg=` is silently ignored and nothing will be flagged, which is worth + knowing before concluding flagging is broken. + ## Please check on beta.reactome.org > Note the URL. `beta.reactome.org` is the new site. `reactome.org/beta` is an