Issues

• The CPTAC rna data for Ovarian Cancer does not have Normal samples

  saezlab/networkcommons#71 · Filter by author Drglazizzo opened on Jun 26, 2025

• Interpretation of edge (arrow) and node colors.

  saezlab/networkcommons#70 · Filter by author fenghuijian opened on May 19, 2025
  8

• Use the scverse cookiecutter template & get listed in the scverse ecosystem

  saezlab/networkcommons#69 · Filter by author Zethson opened on Apr 12, 2025

• Vignette with pertpy

  saezlab/networkcommons#60 · Filter by author deeenes opened on Nov 19, 2024

• Installation issue

  saezlab/networkcommons#59 · Filter by author kantonopoulos opened on Oct 14, 2024
  1

• Output directory

  saezlab/networkcommons#58 · Filter by author deeenes opened on Sep 30, 2024
  1

  

• Merge dev to main

  saezlab/networkcommons#54 · Filter by author martingarridorc opened on Sep 16, 2024
  1

  

• Fix double visualization issues

  bug
  saezlab/networkcommons#53 · Filter by author martingarridorc opened on Sep 16, 2024
  6

  

• Automate testing of Vignettes

  enhancement
  saezlab/networkcommons#52 · Filter by author martingarridorc opened on Sep 16, 2024 · V1
  

• Expand pk utilities

  saezlab/networkcommons#40 · Filter by author vicpaton opened on Jul 22, 2024
  

• Conversor from AnnData to pd.DataFrame

  saezlab/networkcommons#29 · Filter by author vicpaton opened on Jun 18, 2024
  1

• Design the Network object together

  saezlab/networkcommons#26 · Filter by author deeenes opened on Jun 14, 2024
  1

  

• Visualization: add function splitting graph in subrepresentations

  saezlab/networkcommons#25 · Filter by author vicpaton opened on Jun 7, 2024

• Visualization: check libraries providing layouts

  saezlab/networkcommons#24 · Filter by author vicpaton opened on Jun 7, 2024
  

• Prior Knowledge: Integrate BioCypher

  saezlab/networkcommons#17 · Filter by author vicpaton opened on May 30, 2024 · EBI-retreat
  8

  

• Visualization: add plots for evaluation metrics

  saezlab/networkcommons#16 · Filter by author vicpaton opened on May 30, 2024 · EBI-retreat
  

• Visualization: add graph visualizers

  saezlab/networkcommons#15 · Filter by author vicpaton opened on May 30, 2024 · EBI-retreat
  1