Issues

option 36 - spatial community - does not use sm_spatial class
uoy-research/stringmol#49 · opened on Jan 27, 2025
option 35 - spatial Pics from logs - does not use sm_spatial class
uoy-research/stringmol#48 · opened on Jan 27, 2025
option 34 - spatial Ancestry - does not use sm_spatial class
uoy-research/stringmol#47 · opened on Jan 27, 2025
re-start from conf file including RNG state is not consistent
uoy-research/stringmol#46 · opened on Jan 17, 2025 · Research-Ready codebase
1
Find a place to organise the analysis code
uoy-research/stringmol#44 · opened on Jan 17, 2025
Two versions of SpeciesPrintCounts in stringmol.cpp..
uoy-research/stringmol#43 · opened on Jan 17, 2025
remove swlist to try to improve performance
uoy-research/stringmol#42 · opened on Jan 14, 2025 · Research-Ready codebase
divide stringPM into "bucket" and "contents" classes
uoy-research/stringmol#41 · opened on Jan 9, 2025
pass argv and argc from main() into a bucket class constructor
uoy-research/stringmol#40 · opened on Jan 9, 2025
OpcodeCleaveSpatial refactor
uoy-research/stringmol#33 · opened on Dec 30, 2024
Create "Old Experiments" branch for unfinished work, then a "Purge" branch from that..
uoy-research/stringmol#27 · opened on Nov 18, 2024
stringPM::preset renamed as SetHeadsAndDefaults refactor needed - couldn't name it sensibly
uoy-research/stringmol#20 · opened on Nov 10, 2024
stringPM::free_swt renamed as SmithWatermanFree needs moving to other SW functions
uoy-research/stringmol#19 · opened on Nov 10, 2024
stringPM::clearout
uoy-research/stringmol#18 · opened on Nov 9, 2024
1
AgentsLoad also loads many other parameters
uoy-research/stringmol#12 · opened on Nov 2, 2024
refactor make_next and associations
uoy-research/stringmol#11 · opened on Nov 2, 2024
1
von Neumann config
uoy-research/stringmol#7 · opened on Oct 31, 2024
New 1 on 1 menu option
uoy-research/stringmol#6 · opened on Oct 31, 2024
update command line menu
uoy-research/stringmol#5 · opened on Oct 31, 2024