setup.py

from setuptools import setup, find_packages

REQUIRED = [
    'jupyterlab>=4.0.0',
    'scanpy>=1.10.3',
    'scanpy[leiden]>=1.10.3',
    'louvain>=0.8.2',
    'anndata>=0.9.1, <=0.10.9',
    'gprofiler-official>=1.0.0',
    'POT>=0.9.4',
    'scipy>=1.14.1',
    'torchdata>=0.7.1, <=0.7.1',
    'idna>=3.4',
    'plotly>=5.0.0, <=5.24.1',
    'pydantic>=2.9.2',
    'adjustText>=1.3.0',
    'charset-normalizer>=2.1.1',
    'PyYAML>=6.0',
    'numpy>=1.26.0, <1.26.4',
    'numba>=0.59.0, <=0.60.0',
    'pandas>=2.2.3',
    'ipykernel>=6.29.5',
    'ipython>=8.27.0',
    'rpy2>=3.5.1, <=3.5.10',  # linux?
    # 'squidpy>=1.6.1, <=1.6.1',
    # 'dask>=2024.4.1, <=2024.12.1',
    # 'opencv-python>=4.10.0.84, <=4.10.0.84',
]
setup(name='STAX',
      author='Zhen-Hao Guo',
      author_email='guozhenhao17@mails.ucas.ac.cn',
      url='https://github.com/zhanglabtools/STAX',
      version='0.0.1',
      packages=find_packages(),
      install_requires=REQUIRED,
      )