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Bump nf-core/setup-nextflow from 2 to 3 - #97

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Aug 27, 2026
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Bump nf-core/setup-nextflow from 2 to 3#97
alpae merged 1 commit into
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dependabot/github_actions/dev/nf-core/setup-nextflow-3

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Bumps nf-core/setup-nextflow from 2 to 3.

Release notes

Sourced from nf-core/setup-nextflow's releases.

v3.0.0

Breaking Change

  • Upgraded Node.js version from 20 to 24 (#219)

Added

  • secrets input to set Nextflow secrets (KEY=VALUE format, one per line) (#202)
  • Test to verify /dist is up-to-date
  • Pull request template
  • Contributing documentation

Changed

  • Updated ESLint to v9 with flat config format
  • Migrated codebase to ES Modules (ESM)
  • Simplified action.yml by flattening the composite action structure
Changelog

Sourced from nf-core/setup-nextflow's changelog.

[3.0.1] - 2026-07-21

Fixed

  • Resolve fully specified Nextflow versions without relying on nf-core metadata (#242)
  • Preserve archive selection across the Nextflow 24.10.0 distribution boundary (#242)
  • Report malformed or incomplete nf-core metadata with actionable errors (#242)

[3.0.0] - 2024-04-17

Breaking Change

  • Upgraded Node.js version from 20 to 24 (#219)

Added

  • secrets input to set Nextflow secrets (KEY=VALUE format, one per line) (#202)
  • Test to verify /dist is up-to-date
  • Pull request template
  • Contributing documentation

Changed

  • Updated ESLint to v9 with flat config format
  • Migrated codebase to ES Modules (ESM)
  • Simplified action.yml by flattening the composite action structure

[2.1.4] - 2024-12-05

  • Fix ref handling in nested GitHub Actions

[2.1.3] - 2024-12-05

  • remove unnecessary build step

[2.1.2] - 2024-12-05

  • Fix checkout step in main action.yml

[2.1.1] - 2024-12-05

  • Don't print nextflow help output by default, only on debug mode (#173)

[2.1.1] - 2024-12-05

  • Add checkout step to main action.yml (#178)

[2.1.0] - 2024-12-04

Changed

... (truncated)

Commits

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Bumps [nf-core/setup-nextflow](https://github.com/nf-core/setup-nextflow) from 2 to 3.
- [Release notes](https://github.com/nf-core/setup-nextflow/releases)
- [Changelog](https://github.com/nf-core/setup-nextflow/blob/master/CHANGELOG.md)
- [Commits](nf-core/setup-nextflow@v2...v3)

---
updated-dependencies:
- dependency-name: nf-core/setup-nextflow
  dependency-version: '3'
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code labels Aug 27, 2026
@alpae
alpae merged commit ab32b44 into dev Aug 27, 2026
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@dependabot
dependabot Bot deleted the dependabot/github_actions/dev/nf-core/setup-nextflow-3 branch August 27, 2026 08:23
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