Dockerfiles

This repository contains Dockerfile used to make Docker images used at Genomic Paris Centre.

Name		Name	Last commit message	Last commit date
Lineage/lineage-monocle		Lineage/lineage-monocle
MAST/1.0.5		MAST/1.0.5
Monocle		Monocle
Rsubread/1.18.0		Rsubread/1.18.0
SARTools		SARTools
SCPattern/0.0.4		SCPattern/0.0.4
Seurat		Seurat
Sincell/1.6.0		Sincell/1.6.0
UMI-tools		UMI-tools
albacore		albacore
alignqc		alignqc
babel		babel
bamqc/20160127		bamqc/20160127
bcbb-gff/0.6.2		bcbb-gff/0.6.2
bcbio-nextgen/1.0.0a0		bcbio-nextgen/1.0.0a0
bcl2fastq/bcl2fastq-1.8.4		bcl2fastq/bcl2fastq-1.8.4
bcl2fastq2		bcl2fastq2
bed2bigbed		bed2bigbed
bedops/2.4.14		bedops/2.4.14
bedtools		bedtools
biomart/2.26.1		biomart/2.26.1
bioperl/bioperl-1.6.924		bioperl/bioperl-1.6.924
biopython/1.63-1		biopython/1.63-1
bioservices		bioservices
biotoolbox		biotoolbox
blacklistremove		blacklistremove
blast+/2.2.28		blast+/2.2.28
blast2/2.2.26		blast2/2.2.26
bowtie		bowtie
bwa		bwa
casava/casava-1.8.2		casava/casava-1.8.2
cite-seq-count/v1.4.1		cite-seq-count/v1.4.1
cutadapt		cutadapt
deepbinner/0.2.0		deepbinner/0.2.0
deeptools		deeptools
deseq		deseq
dwgsim/dwgsim-0.1.11		dwgsim/dwgsim-0.1.11
eoulsan/eoulsan-1.2.2		eoulsan/eoulsan-1.2.2
express/express-1.5.1		express/express-1.5.1
fastqc		fastqc
genometools		genometools
gff3-ptools/gff3-ptools-0.4.0		gff3-ptools/gff3-ptools-0.4.0
ggplot2		ggplot2
gmap/2017-02-15		gmap/2017-02-15
guppy-gpu		guppy-gpu
guppy		guppy
hgcolor		hgcolor
hisat/0.1.5-beta		hisat/0.1.5-beta
htseq		htseq
k8/0.2.4		k8/0.2.4
kentutils/302.1.0		kentutils/302.1.0
macs		macs
marginAlign/0.1		marginAlign/0.1
matplotlib/1.4.3		matplotlib/1.4.3
minimap2/v2.3		minimap2/v2.3
miso/miso-0.5.3		miso/miso-0.5.3
nanook/0.79		nanook/0.79
nanopack		nanopack
olb/olb-1.9.4		olb/olb-1.9.4
ont-fast5-api		ont-fast5-api
paftools/2.9		paftools/2.9
picard/1.134		picard/1.134
pinfish/master		pinfish/master
porechop		porechop
poretools/0.6.0		poretools/0.6.0
proovread/2.14.0		proovread/2.14.0
ribomap/1.2		ribomap/1.2
ribopicker/0.4.3		ribopicker/0.4.3
riboproanalysis/1.0.0		riboproanalysis/1.0.0
rsem		rsem
samtools		samtools
scClustering/seurat-clustering		scClustering/seurat-clustering
scDGE/dge-scde		scDGE/dge-scde
scdd		scdd
scde		scde
scpoolednormalization		scpoolednormalization
scqualitychecking		scqualitychecking
scran		scran
singlecellexperiment/3.7		singlecellexperiment/3.7
star		star
subread		subread
sumNormalization		sumNormalization
tophat2/2.0.14		tophat2/2.0.14
trimgalore/0.4.1		trimgalore/0.4.1
velocyto		velocyto
README.md		README.md

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