This package provides a client to the enviPath biotransformation database and pathway prediction system. It accesses enviPath resources through its legacy API. A new, faster API is currently under development.
Bioconductor release version:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mia")
Beta version:
remotes::install_github("Minotau-R/ariadne")
If you use enviPath in your research please cite:
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Hafner, J., Lorsbach, T., Schmidt, S., Brydon, L., Dost, K., Zhang, K., Fenner, K., & Wicker, J (2024). Advancements in Biotransformation Pathway Prediction: Enhancements, Datasets, and Novel Functionalities in enviPath. Journal of Cheminformatics, 16, 93, https://doi.org/10.1186/s13321-024-00881-6
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Wicker, J., Lorsbach, T., Gütlein, M., Schmid, E., Latino, D., Kramer, S., & Fenner, K. (2016). enviPath - The environmental contaminant biotransformation pathway resource. Nucleic Acids Research, 44(D1), D502–D508. https://doi.org/10.1093/nar/gkv1229