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@NW-PaGe

The Northwest Pathogen Genomics Center of Excellence

README.md

Welcome! 👋

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🙋‍♀️ This is the Github Org for the Northwest Pathogen Genomics Center of Excellence.

🌈 Please review the contributing guides for details on how to contribute to a project

🌈 Please review our GitHub guide

👩‍💻 Check out our website! https://nwpage.org/

🍿 Fun facts - what does your team eat for breakfast?

Popular repositories Loading

  1. bigbacter bigbacter Public

    Bacterial surveillance pipeline.

    Nextflow 30 7

  2. vaper vaper Public

    Viral (meta)-genome assembly pipeline.

    Nextflow 23 2

  3. epitome epitome Public

    Pipeline for creating comprehensive viral reference sets.

    Python 12

  4. CorgiSNPs CorgiSNPs Public

    Fungal core genome analysis

    Nextflow 4

  5. covid_seq_elr covid_seq_elr Public

    Summarize and share COVID-19 Sequencing Metadata ELR data flow at the Washington State Department of Health

    R 3

  6. lineage_classifications lineage_classifications Public

    The lineage_classifications.csv file is maintained by the WA DOH Molecular Epidemiology Program in order to group the lineages for the Sequencing & Variants Report.

    R 2

Repositories

Showing 10 of 40 repositories
  • WNV Public Forked from nextstrain/WNV

    the repository used to build West Nile Virus for nextstrain

    NW-PaGe/WNV's past year of commit activity
    Python 0 3 1 0 Updated Sep 22, 2026
  • CorgiSNPs Public

    Fungal core genome analysis

    NW-PaGe/CorgiSNPs's past year of commit activity
    Nextflow 4 MIT 0 0 1 Updated Sep 22, 2026
  • corgisnps-docs Public

    Documentation page for the CorgiSNPs pipeline

    NW-PaGe/corgisnps-docs's past year of commit activity
    Ruby 0 MIT 0 0 0 Updated Sep 22, 2026
  • bigbacter-docs Public
    NW-PaGe/bigbacter-docs's past year of commit activity
    HTML 0 MIT 0 0 3 Updated Sep 22, 2026
  • SNOWa Public

    Analysis and visualization of SARS-CoV-2 genomic data from wastewater samples

    NW-PaGe/SNOWa's past year of commit activity
    HTML 2 0 0 0 Updated Sep 22, 2026
  • bigbacter Public

    Bacterial surveillance pipeline.

    NW-PaGe/bigbacter's past year of commit activity
    Nextflow 30 MIT 7 4 0 Updated Sep 18, 2026
  • measles Public Forked from nextstrain/measles

    Nextstrain build for measles virus

    NW-PaGe/measles's past year of commit activity
    Python 0 9 0 0 Updated Sep 17, 2026
  • epitome Public

    Pipeline for creating comprehensive viral reference sets.

    NW-PaGe/epitome's past year of commit activity
    Python 12 MIT 0 0 1 Updated Sep 17, 2026
  • BacterialGenomicsSummaryOutput Public
    NW-PaGe/BacterialGenomicsSummaryOutput's past year of commit activity
    R 0 MIT 0 2 1 Updated Sep 16, 2026
  • polycore Public

    Ploidy-aware core genome analysis

    NW-PaGe/polycore's past year of commit activity
    Python 2 0 0 0 Updated Sep 15, 2026
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