Avoid late cache probe during configure checks

[yoshifuminakamura]

Summary

• avoid terminating late host cache probes while configure/config.status/missing are probing make/ninja
• keep late restore active for the real build tool call after configure finishes
• add a cache test that reproduces an autotools-style configure probe before the real make build

Safety

• common wrapper/test-only change; no app-side build API or runner YAML changes
• diff scan found no token/secret-like values

Tests

• bash scripts/tests/test_build_cache.sh
• bash scripts/tests/test_build_environment_snapshot.sh
• shellcheck -S error scripts/build_with_cache.sh scripts/build_tool_wrappers/bk_build_tool_wrapper.sh scripts/collect_environment_snapshot.sh scripts/tests/test_build_cache.sh
• bash -n scripts/build_with_cache.sh scripts/build_tool_wrappers/bk_build_tool_wrapper.sh scripts/collect_environment_snapshot.sh scripts/tests/test_build_cache.sh
• /home/nakamura/fugakunext/venv/bin/python -m pytest result_server/tests/test_environment_snapshot_ci_scripts.py