Snitkin-Lab-Umich
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Showing 10 of 54 repositories
- snpkit Public Forked from alipirani88/snpkit
Active version of snpkit, a Modular/Scalable workflow for Microbial Variant Calling, Recombination detection and Phylogenetic tree reconstruction.
- pangenome_blast_smk Public
A snakemake pipeline for comparing Panaroo pangenome results against a BLAST search
- cauris_panaroo Public
Simple scripts for converting the output of QCD pipelines to be compatible with Panaroo and Orthofinder
- SNPmake Public
Updated Snakemake implementation of SNPkit for microbial variant calling, filtering, masking and reference based consensus alignment generation.
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