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Update figure to remove MSstats and DIANN from the workflow

Status: Open.

#703 In bigbio/quantms;

· ypriverol opened on Apr 15, 2026

quantms comet version is null in pmultiqc

Bug fix

high-priority

Status: Open.

#698 In bigbio/quantms;

· ypriverol opened on Apr 13, 2026

CI failure: OpenMS container cannot create config directory

Status: Open.

#691 In bigbio/quantms;

· ypriverol opened on Apr 3, 2026

Package pkg_resources not found when running quantmsutilsc

bugSomething isn't workingSomething isn't working

Status: Open.

#685 In bigbio/quantms;

· apalleja opened on Mar 12, 2026

in the main figures we should add pmultiqc as last step

enhancementNew feature or requestNew feature or request

Status: Open.

#658 In bigbio/quantms;

· ypriverol opened on Feb 13, 2026

Update parameters that are going to pmultiqc

Status: Open.

#654 In bigbio/quantms;

· ypriverol opened on Jan 21, 2026

·  

Release 1.8.0

Discuss: Targeted proteomics support in quantms ecosystem.

enhancementNew feature or requestNew feature or request

Status: Open.

#648 In bigbio/quantms;

· thanadol-git opened on Jan 16, 2026

Put SDRF creation skill on Claude marketplace

Status: Open.

#647 In bigbio/quantms;

· jpfeuffer opened on Jan 14, 2026

Discuss SDRF validation scope

Status: Open.

#646 In bigbio/quantms;

· jpfeuffer opened on Jan 14, 2026

Add extensive documentation on how to structure biological and technical replicates for MSstats or general diff. expr. usage

Status: Open.

#645 In bigbio/quantms;

· jpfeuffer opened on Jan 14, 2026

Deprecate openms tsv as an option for SDRF input and allow csv AND tsv

Status: Open.

#638 In bigbio/quantms;

· jpfeuffer opened on Jan 13, 2026

Conform with upcoming big nf-core requirements

enhancementNew feature or requestNew feature or request

low-priority

Status: Open.

#607 In bigbio/quantms;

· jpfeuffer opened on Nov 3, 2025