Pc001 multispec prototype - #1997
Open
joshqsumner wants to merge 9 commits into
Open
Conversation
 |
|
Overall Grade |
Security Reliability Complexity Hygiene Coverage |
Code Review Summary
| Analyzer | Status | Updated (UTC) | Details |
|---|---|---|---|
| Python |  |
Aug 25, 2026 8:03p.m. | Review ↗ |
| Code coverage | |
Aug 25, 2026 8:03p.m. | Review ↗ |
Code Coverage Summary
| Language | Line Coverage (New Code) | Line Coverage (Overall) |
|---|---|---|
| Aggregate | 100% [✓ above threshold] |
100% |
| Python | 100% [✓ above threshold] |
100% |
➟ Additional coverage metrics may have been reported. See full coverage report ↗
Important
AI Review is run only on demand for your team. We're only showing results of static analysis review right now. To trigger AI Review, comment @deepsourcebot review on this thread.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Describe your changes
adds
MS_dataclass andpcv.multispecmodule containingpcv.multispec.read_msto read files/directories/lists of files intoMS_dataobjects.Type of update
This is a new feature.
Associated issues
None
Additional context
This is a prototype of how we might internally handle new multispectral data from the Pheno-Core's new MS camera given the metadata layout we are using there.
An example dataset is downloaded on stargate at
/data/datascience/users/jsumner/pc001_test/images/.For the reviewer
See this page for instructions on how to review the pull request.
plantcv/mkdocs.ymlupdating.md