The click documentation presented for the trace command looks broken:
Commands:
shuffle Generate randomized plate maps from a list of...
trace Trace the samples over their various plates.
mcnaughtonadm@seurat:~$ uvx wellshuffled trace
WellShuffled: A tool for generating randomized plate maps.
Usage: wellshuffled trace [OPTIONS] INPUT_PATH
Try 'wellshuffled trace --help' for help.
Error: Missing argument 'INPUT_PATH'.
mcnaughtonadm@seurat:~$ uvx wellshuffled trace --help
WellShuffled: A tool for generating randomized plate maps.
Usage: wellshuffled trace [OPTIONS] INPUT_PATH
Trace the samples over their various plates.
Parameters ---------- input_path : str Path to a
directory of plate files or a single combined plate file.
output_csv : str, optional Path to save the full
trajectory map as a CSV file. use_numeric_wells : bool,
optional Return the plate positions as 1-based column
major numeric values.
Options:
--output-csv PATH Optional path to save the full
trajectory map as a CSV file.
--numeric Return the plate positions as 1-based
column major numeric values.
--help Show this message and exit.
We need to clean up the doc for the trace command
The
clickdocumentation presented for thetracecommand looks broken:We need to clean up the doc for the
tracecommand