Skip to content

convertToGeneAnswers should accept list names #61

Description

@yochannah

convertToGeneAnswers constitutes a wrapper function for converting the results of the doEnrichment function to a GeneAnswers-class object.

To run this function, one must pass a data.frame containing the gene identifiers that were enriched on as the geneInput argument.

Given that enrichment can be run using either a list of ids or an InterMine list name, it would make sense if convertToGeneAnswers would accept a list name for geneInput as well - otherwise we have to run a query to fetch the list contents client side, even though we didn't need to do this for the enrichment in the previous step.

Activity

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions