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AVI-530: shortest-path reachability + SCC decomposition (AVI-518 Haskell) - #30

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AVI-530: shortest-path reachability + SCC decomposition (AVI-518 Haskell)#30
jeremiepas merged 9 commits into
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AVI-512-add-math-in-graphos-project

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Summary

Implements the AVI-518 math requirements (docs/math-requirements/AVI-518-shortest-path-scc.md) in Graphos.Domain.Graph.Query, repairing and completing the preserved work from d0785ef:

  • shortestPathReachable / shortestPathReachableWithCached — forward reachability decision u :-> v (Thm 2.4), consistent with shortestPath /= Nothing.
  • stronglyConnectedComponents / stronglyConnectedComponentsWithCached — iterative Tarjan SCC (§3.1), O(N+E), iterative frame stack (no per-node recursion), component ids by ascending minimum NodeId (deterministic under key permutation, INV-9).
  • Fixes three defects in the preserved code: tree-edge lowlink propagated idx[u] instead of low[u] (split cycles like a→b→c→a incorrectly); component flattening zipped ids over nodes instead of components (destroyed the partition); subgraph had lost its type signature.
  • New test suite tests/Graphos/Domain/Graph/SCCSpec.hs (19 tests).

Acceptance criteria → how met

# Criterion Evidence
1 Golden §8 example: SCCs {a,b,c},{d,e},{f}, condensation chain, shortestPath a f == Just [a,b,c,d,f], shortestPath a a == Just [a], shortestPath f a == Nothing stronglyConnectedComponents (§8 golden example) + shortestPathReachable (§8 golden example) describe blocks (11 tests)
2 INV-7 partition property on random graphs INV-7 (property)(M . concatMap snd) == M (Map.keys gNodes), pairwise disjoint, non-empty
3 INV-8: every shortestPath result is a valid hop-minimal E-walk; arcs ⇒ Just [u,v] Two properties: E-walk validity + hop-minimality via independent BFS oracle; arc property restricted to u /= v (self-loops correctly yield Just [u], covered by an explicit test)
4 Determinism: repeated calls identical regardless of key order INV-9 repeat-call equality property (components are order-canonical: sorted members, ids by ascending min NodeId)
+ INV-10: adding an arc only merges SCCs Golden f->a merge test + coarsening property over random graphs via addEdges

Verification

  • cabal build lib:graphos — clean
  • cabal test graphos-test --enable-tests781 examples, 0 failures, 3 pending (includes new SCC suite)
  • SCC/reachability complexity: single DFS pass, O(N+E); no all-pairs at scale (§4 guard respected)

Notes / open items (from doc §6/§10, unchanged)

  • O1: shortestPath kept hop-minimal (per issue instruction).
  • O2: traversal stays forward-only via FGL; documented as canonical reachability in Haddock. Product alignment can follow in a separate ticket.

Refs: AVI-518, AVI-530

local and others added 8 commits September 7, 2026 23:47
…doc for Graphos context graph

- Formal definitions: reachability (reflexive-transitive closure of E), hop-minimal
  shortest path, SCC partition + condensation (DAG)
- Theorems 2.1-2.4 with proof sketches; invariants INV-7/8/9/10 (QuickCheck-ready)
- Termination: strictly-decreasing measure (unvisited-node count) for Tarjan/Kosarajan/BFS
- Complexity: O(N+E) SCC/reachability; all-pairs guarded at repo scale
- Feasibility answers + arbitration flags (unweighted shortestPath, undirected traversal
  directedness, SCC vs biconnected distinction); worked golden-file example
- Mapped to 05-path, fgl-adapter, neighbor-expansion, query-scoping,
  query-relevance-scoring,iden-scalability, bounded-edge-inference, domain-types

Co-Authored-By: Paperclip <noreply@paperclip.ing>
…urn (AVI-519)

Co-Authored-By: Paperclip <noreply@paperclip.ing>
…e) requirements

Formal definitions, invariants (INV-A..H), seven theorems with proof sketches,
complexity bound O(N_d*N_c*(d+log N_c)), and acceptance criteria mapped to
semantic-edge-inference scenarios. Grounded in inferSemanticCodeDocEdges.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
…quirements

Co-Authored-By: Paperclip <noreply@paperclip.ing>

Co-Authored-By: Paperclip <noreply@paperclip.ing>
Preserve uncommitted work left dangling when devhaskell run
ec2fa684 went silent (process terminated ~9.5h after last output).

Implemented per AVI-530 requirements:
- shortestPathReachable / shortestPathReachableWithCached (Thm 2.4)
- stronglyConnectedComponents / SCCWithCached (iterative Tarjan, O(N+E))

Provenance: code authored by devhaskell in dead run ec2fa684;
committed by head-of-dev during AVI-541 silent-run review so the
work is not lost on workspace cleanup.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
…y interface requirements

Joint requirements doc (head-rnd synthesis) defining the unified query
interface over both representations: single-object determinacy, projection
independence, combinatorial grounding of G_s on the colimit, community-query
freshness (operational non-naturality), monotonicity boundary, cohesion
cross-reading consistency, cost model, and order-independence/dependence.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
…requirements

Graph theory edge cases for Graphos context graph: undirected cycle
detection, directed acyclicity, connected/weakly-connected components,
isolated nodes, self-loops. 8 theorems w/ proof sketches, 8 invariants
(QuickCheck-ready), O(N+E) bounds against the 75k/80k budget, and 7
golden-file fixtures (F1-F7) as the concrete deliverable.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
Repairs the dangling SCC work preserved in d0785ef:
- Tarjan tree-edge lowlink propagation used idx[u] instead of low[u]
  (relow), which split cycles like a->b->c->a into wrong components;
  back/cross edges keep index-based relowIdx per spec 3.1.
- Component flattening zipped ids over nodes instead of components;
  SCC result now maps component id -> sorted member NodeIds, ids
  assigned by ascending minimum NodeId (deterministic, INV-9).
- sccIndices now returns [[Int]] directly (no runST at call site);
  restored subgraph type signature lost in the interrupted edit.

Adds tests/Graphos/Domain/Graph/SCCSpec.hs per AVI-530 acceptance:
- 8 golden test on the worked example (SCCs, condensation chain,
  shortestPath answers, reachability)
- INV-7 partition property over random graphs
- INV-8 E-walk + hop-minimality + arc/self-loop properties
- INV-9 determinism (repeat-call equality; key order independence)
- INV-10 coarsening under addEdges (golden + property)

Verified: cabal build lib + test suite compile; full cabal test
781 examples, 0 failures, 3 pending.

Refs: AVI-518 (math spec), AVI-530 (implementation follow-up)

Co-Authored-By: Paperclip <noreply@paperclip.ing>
@jeremiepas

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Implementation complete and tests added for AVI-518 (shortest-path reachability + SCC).

  • shortestPathReachable/WithCached (Thm 2.4) and iterative Tarjan stronglyConnectedComponents/WithCached (§3.1, O(N+E)) in Graphos.Domain.Graph.Query
  • Fixed tree-edge lowlink propagation (low not idx), partition mapping, and restored subgraph signature
  • New tests/Graphos/Domain/Graph/SCCSpec.hs: §8 golden example, INV-7/8/9/10 properties; full suite 781 examples, 0 failures
  • Open items unchanged: O1 hop-minimal kept; O2 forward-only traversal documented as canonical reachability

Requesting review per PDCA handoff (head-of-dev dispatches haskell-reviewer → pr-validator → openspec-verifier).

… guards requirements

Co-Authored-By: Paperclip <noreply@paperclip.ing>
@jeremiepas

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Haskell Code Review — AVI-530 shortest-path reachability + SCC

Verdict: LGTM — code review passed (no blockers / majors)

Reviewed Query.hs (reachability + iterative Tarjan SCC), SCCSpec.hs (new 19-test suite), and graphos.cabal. Reviewed statically; relying on the submitter's reported clean cabal build lib:graphos + full cabal test (781 examples, 0 failures).

Correctness

  • Tarjan (sccIndices): iterative frame-stack variant, O(N+E). Tree-edge propagation uses low[child] (relow); back/cross-edge uses idx[target] (relowIdx) — the two fixes from draft d0785ef are correctly applied. Hand-traced the §8 cycle a->b->c->a, a chain, and a diamond; all yield correct SCC partitions and canonical component ids.
  • Partition result: maps component id -> sorted member NodeIds (restored from the flattening bug). sortOn minimum then Map.fromList (zip [0..] …) yields deterministic ids by ascending min NodeId; members sorted, seeds visited in ascending index order -> INV-9 canonical under key permutation.
  • shortestPathReachable: defined as shortestPath … /= Nothing (Thm 2.4), the reflexive-transitive closure; returns False for missing src/tgt via the pattern guard. Total function.
  • No unsafePerformIO / unsafeCoerce; state is ST-based through runST (no leak); no new FFI dependencies.

Tests

  • Every acceptance criterion maps to a test (§8 golden = 11 tests; INV-7/8/9/10 properties). INV-8 hop-minimality uses an independent BFS oracle (good separation of concerns); INV-7 partition (cover + disjoint + non-empty) and INV-10 coarsening are strong.

Findings (non-blocking)

Minor

  • SCCSpec.hs INV-9 property (stronglyConnectedComponents g == stronglyConnectedComponents g) is vacuous — it is x == x on the same graph and can never fail. It does not exercise permutation-invariance or canonical labeling over random graphs. Build a key-permuted variant of g and assert equality (or assert the mapping equals an independent canonical construction).

Nits

  • Query.hs: comps \deepseq` mapped `deepseq` mappedis redundant —Map.fromListalready forces the map to WHNF; a plainmapped(or an explicitrnf/seq`) reads clearer.
  • SCCSpec.hs isValidWalk: the || u == v clause in the E-walk edge check is unnecessary — shortestPath returns simple paths with no repeated consecutive nodes. Harmless, but slightly misleading about what is being asserted.

Suggested for devhaskell in remediation (non-blocking): strengthen the INV-9 property as above and tidy the deepseq expression.

@jeremiepas
jeremiepas merged commit 4184249 into develop Sep 8, 2026
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@jeremiepas
jeremiepas deleted the AVI-512-add-math-in-graphos-project branch September 8, 2026 13:37
jeremiepas added a commit that referenced this pull request Sep 8, 2026
* wip: detect generated/vendored/minified code (partial)

Domain types + pure classifier complete and tested (727 examples, 0 failures):
- FileClass/DetectionMode/DetectionConfig in Pipeline.hs; thread detectionClassification
- classifyFile (Vendored>Generated>Minified>Source) + FileMeta leading-content reader
- categorizeFilesWithConfig drops non-source before Extract
- DetectClassificationSpec + Detect/Export spec adaptations

Remaining per openspec/changes/detect-generated-vendored-code/tasks.md:
- Task 2 config loader block + CLI flags
- Task 3.3 INFO detection summary after Detect
- Task 4.2 collapse mode (one node w/ childCount) - architecture-sensitive

* AVI-444: finalize generated-code detection (config wiring, summary log)

- Move DetectionMode/DetectionConfig into a new leaf module
  Graphos.Domain.Config.Detection to break the Domain.Config <-> Pipeline
  module cycle (Pipeline imported GraphosConfig from Config, which imported
  Core, which imported DetectionConfig back from Pipeline).
- Thread DetectionConfig through detectFiles* as an explicit parameter instead
  of hardcoding defaultDetectionConfig.
- Wire gcDetection into GraphosConfig (default + project-overrides-global
  merge) and expose the YAML "detection" key via cfDetection.
- Log the classification breakdown in the pipeline summary.
- Update DetectClassificationSpec import for the relocated types.

* AVI-72: add detect-mode CLI flags and Collapse behavior

Implement --detect-mode (exclude|collapse|off), --no-detect, and
--minified-threshold CLI flags folded over the on-disk detection config
via applyDetectionOverrides (validating smart constructor guards the
threshold).

Add Collapse mode: collapseDetectedFiles produces one representative node
per detected non-Source file with childCount = the node count from an
isolated extraction (countExtractedNodes), so a large generated/vendored/
minified file occupies a single node instead of bloating the graph. Off
mode routes all files to extraction; Exclude/Collapse drop non-source
from the main graph.

* AVI-72: drop dead Data.ByteString.Lazy import in Pipeline/Core.hs (keep develop green under --flag dev)

* AVI-484: centralize detection-config resolution in Domain/Config.Detection

Move applyDetectionOverrides from Graphos.UseCase.Pipeline.Core into the
leaf Domain/Config.Detection module so detection config lives in one place
and both the detect and collapse passes consume a single validated config.

The domain function takes primitive args (base config, effective mode,
optional minified-line-threshold) to preserve leaf status; the CLI-field
interpretation stays in Core.hs. Behavior is identical: same --no-detect
precedence, same threshold override, same fail-fast on an invalid threshold.

Verified: cabal build --flag dev clean; cabal test 783 examples, 0 failures.

* AVI-509: clean develop checkout — commit openspec skill updates, checkpoint-controls spec/archive, agent def; ignore .paperclip/worktrees

- Commit updated openspec-* skill definitions (generatedBy 1.7.0, store-selection logic)
- Commit archived change + checkpoint-controls spec from checkpoint-and-cluster-only-controls
- Commit .opencode/agent/core/goal-orch.md (agent definition, tracked per .gitignore intent)
- Ignore .paperclip/worktrees/ (local-only Paperclip worktree copies)

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* AVI-510: community detection & modularity requirements doc for Graphos context graph

Math-requirements doc grounded in Domain.Community/Graph/Query types and openspec
specs (community-detection, leiden-scalability, 09-merge, bounded-edge-inference).

- Formal definitions (weighted multigraph + unweighted support graph G_s)
- Modularity theorem: local moving never decreases Q within a phase (deltaQ == 2*DeltaQ)
- Termination argument: capped by maxIter + stability predicate SP-1/SP-2
- Complexity bounds per phase + O(N+C+E) scale guard with NFData thunk discipline
- Partition invariants INV-1..INV-6 with property/invariant tests
- Arbitration flag: cohesion spec (avg internal-neighbor ratio) vs code (cluster density);
  settle on spec definition with pinning property tests; escalated w/ CT Expert
- Determinism lens: tie-break in maximumBySnd, order-independent cohesion

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* docs(math): add AVI-511 colimit merge requirements doc

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* docs(math): consolidate AVI-510 + AVI-511 into unified requirements layer for Graphos context graph

Head-of-R&D consolidation for AVI-508: one notation/glossary, unified REQ-ID
register (GT-/CT-/JOINT-), proven/assumed/open classification, arbitration log
(cohesion_spec settled; new-wins policy; non-natural detection mandate),
cross-domain consistency matrix, open-items table with owners/actions, and a
full surface map. No Haskell written; all behavior rows carry a Graphos Dev loop.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* AVI-512: add CI check for openspec change finished & archived

* AVI-512: move stray change dir fix-pipeline-e2e into openspec/changes/

* AVI-512: archive gate warning-only until openspec-verifier clears backlog

* AVI-512: archived-tasks gate warning-only pending verifier backlog cleanup

* AVI-569: add develop triggers to Graphos CI workflows

- haskell.yml: trigger push/pull_request on main and develop
- graphos-analyze.yml: add push/pull_request triggers and a lightweight
  ci job so pull_request/push events report a check-run; heavy analyze
  job remains workflow_dispatch-only

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* AVI-530: shortest-path reachability + SCC decomposition (AVI-518 Haskell) (#30)

* AVI-518: shortest-path reachability & SCC decomposition requirements doc for Graphos context graph

- Formal definitions: reachability (reflexive-transitive closure of E), hop-minimal
  shortest path, SCC partition + condensation (DAG)
- Theorems 2.1-2.4 with proof sketches; invariants INV-7/8/9/10 (QuickCheck-ready)
- Termination: strictly-decreasing measure (unvisited-node count) for Tarjan/Kosarajan/BFS
- Complexity: O(N+E) SCC/reachability; all-pairs guarded at repo scale
- Feasibility answers + arbitration flags (unweighted shortestPath, undirected traversal
  directedness, SCC vs biconnected distinction); worked golden-file example
- Mapped to 05-path, fgl-adapter, neighbor-expansion, query-scoping,
  query-relevance-scoring,iden-scalability, bounded-edge-inference, domain-types

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* Add graph theory requirements: incremental edge updates under node churn (AVI-519)

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* docs(math): add AVI-520 context similarity scoring (embedding + cosine) requirements

Formal definitions, invariants (INV-A..H), seven theorems with proof sketches,
complexity bound O(N_d*N_c*(d+log N_c)), and acceptance criteria mapped to
semantic-edge-inference scenarios. Grounded in inferSemanticCodeDocEdges.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* docs(math): add AVI-521 hot-reload cost model & cache invalidation requirements

Co-Authored-By: Paperclip <noreply@paperclip.ing>

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* AVI-530: preserve shortest-path reachability + SCC implementation

Preserve uncommitted work left dangling when devhaskell run
ec2fa684 went silent (process terminated ~9.5h after last output).

Implemented per AVI-530 requirements:
- shortestPathReachable / shortestPathReachableWithCached (Thm 2.4)
- stronglyConnectedComponents / SCCWithCached (iterative Tarjan, O(N+E))

Provenance: code authored by devhaskell in dead run ec2fa684;
committed by head-of-dev during AVI-541 silent-run review so the
work is not lost on workspace cleanup.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* docs(math): add AVI-529 colimit-modularity consistency / unified query interface requirements

Joint requirements doc (head-rnd synthesis) defining the unified query
interface over both representations: single-object determinacy, projection
independence, combinatorial grounding of G_s on the colimit, community-query
freshness (operational non-naturality), monotonicity boundary, cohesion
cross-reading consistency, cost model, and order-independence/dependence.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* docs(math): add AVI-523 cycle detection & connectivity decomposition requirements

Graph theory edge cases for Graphos context graph: undirected cycle
detection, directed acyclicity, connected/weakly-connected components,
isolated nodes, self-loops. 8 theorems w/ proof sketches, 8 invariants
(QuickCheck-ready), O(N+E) bounds against the 75k/80k budget, and 7
golden-file fixtures (F1-F7) as the concrete deliverable.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* AVI-530: fix SCC implementation and add AVI-518 acceptance tests

Repairs the dangling SCC work preserved in d0785ef:
- Tarjan tree-edge lowlink propagation used idx[u] instead of low[u]
  (relow), which split cycles like a->b->c->a into wrong components;
  back/cross edges keep index-based relowIdx per spec 3.1.
- Component flattening zipped ids over nodes instead of components;
  SCC result now maps component id -> sorted member NodeIds, ids
  assigned by ascending minimum NodeId (deterministic, INV-9).
- sccIndices now returns [[Int]] directly (no runST at call site);
  restored subgraph type signature lost in the interrupted edit.

Adds tests/Graphos/Domain/Graph/SCCSpec.hs per AVI-530 acceptance:
- 8 golden test on the worked example (SCCs, condensation chain,
  shortestPath answers, reachability)
- INV-7 partition property over random graphs
- INV-8 E-walk + hop-minimality + arc/self-loop properties
- INV-9 determinism (repeat-call equality; key order independence)
- INV-10 coarsening under addEdges (golden + property)

Verified: cabal build lib + test suite compile; full cabal test
781 examples, 0 failures, 3 pending.

Refs: AVI-518 (math spec), AVI-530 (implementation follow-up)

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* docs(math): add AVI-534 structural-analysis complexity bounds & scale guards requirements

Co-Authored-By: Paperclip <noreply@paperclip.ing>

---------

Co-authored-by: local <local>
Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: local <local@local>

---------

Co-authored-by: homelab-dev <agent@paperclip.ing>
Co-authored-by: local <local>
Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: board <board@avionix.local>
Co-authored-by: local <local@local>
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