Issues

• Error parsing SAM file MAPQ must be zero if RNAME is not specified

  lbcb-sci/graphmap2#27 · Filter by author LouisLeNezet opened on Apr 14, 2025

• comparison with overlap alignment ground truth usearch -global?

  lbcb-sci/graphmap2#26 · Filter by author jianshu93 opened on Aug 8, 2024

• IGV not finding sequence from bam file generated from a graphmap2 sam file

  lbcb-sci/graphmap2#25 · Filter by author Coahuila opened on Apr 6, 2023

• Alignment failed

  lbcb-sci/graphmap2#24 · Filter by author dinovski opened on Jan 10, 2023

• sse should be used only on x86_64

  lbcb-sci/graphmap2#22 · Filter by author martin-g opened on Jul 15, 2022
  1

• Build fails on Linux ARM64

  lbcb-sci/graphmap2#21 · Filter by author martin-g opened on Jul 15, 2022
  2

• Header not contain PG line and duplicate SQ line

  lbcb-sci/graphmap2#20 · Filter by author manburst opened on Apr 6, 2021

• Segmentation fault

  lbcb-sci/graphmap2#19 · Filter by author ksahlin opened on Feb 2, 2021

• make installation error

  lbcb-sci/graphmap2#18 · Filter by author ksahlin opened on Jan 12, 2021

• Graphmap2 index in shared memory

  lbcb-sci/graphmap2#17 · Filter by author lpryszcz opened on Dec 18, 2020

• fail to install the graphmap2 v0.6.4

  lbcb-sci/graphmap2#16 · Filter by author sen1019san opened on Oct 13, 2020
  6

• Error building with g++ 9.3

  lbcb-sci/graphmap2#15 · Filter by author giesselmann opened on Jul 14, 2020

• Sam file not create it killed

  lbcb-sci/graphmap2#14 · Filter by author aman21392 opened on Jun 25, 2020
  1

• Calling help return exit-code 1

  lbcb-sci/graphmap2#13 · Filter by author Darkless012 opened on Apr 1, 2020

• clang error

  lbcb-sci/graphmap2#12 · Filter by author BrianaGross opened on Mar 26, 2020
  7

• Segmentation Fault on Yeast Transcriptome

  lbcb-sci/graphmap2#11 · Filter by author mjoppich opened on Dec 9, 2019
  9

• No reads are aligned?

  lbcb-sci/graphmap2#10 · Filter by author woodoo46 opened on Dec 6, 2019
  14

• Graphmap2 can't align dRNAseq reads with U

  lbcb-sci/graphmap2#7 · Filter by author lpryszcz opened on Nov 20, 2019
  1

• Memory up to 140GB!!!

  lbcb-sci/graphmap2#5 · Filter by author ydLiu-HIT opened on Aug 28, 2019

• Segmentation fault

  lbcb-sci/graphmap2#4 · Filter by author ydLiu-HIT opened on Aug 27, 2019
  8

• Segmentation fault

  lbcb-sci/graphmap2#3 · Filter by author michieitel opened on Aug 7, 2019
  6

• Illegal instruction

  lbcb-sci/graphmap2#2 · Filter by author Tintest opened on Aug 5, 2019
  1

• ERROR: CIGAR and query sequence are of different length

  lbcb-sci/graphmap2#1 · Filter by author michieitel opened on Aug 5, 2019
  15