National Microbiome Data Collaborative

Suite of tools to configure and load an ontology from the OboFoundary into the data object for OntologyClass as specified by NMDC schema

Runtime system for NMDC data management and orchestration

NMDC data processing system for metabolomics, lipidomics, and NOM data. Workflow and metadata manager.

Data portal client and server for NMDC.

National Microbiome Data Collaborative (NMDC) unified data model

A repository to that holds the code for the NMDC Submission portal metadata suggestor tool, powered by AI

MongoDB + Parquet analytics for NCBI BioSample/BioProject/SRA and NMDC submission-portal metadata. Environmental triad annotation, harmonized-attribute counts, measurement discovery, value-set voting sheets.

Mass spectrometry metadata generation

Prototype automation