CMR-11429 warnings about libs overwriting built in clojure functions

[jceaser]

Overview

While working on https://bugs.earthdata.nasa.gov/browse/CMR-11368 an attempt was made to clean up some long standing warnings in the compile logs related to libraries trying to overwrite built in clojure functions. These log entries were getting in the way and making it hard to read other errors of interest. So, some time was taken to resolve those issues.

These changes are all the changes which were not directly related to CMR-11368, since there were two tickets this one is used for the overflow changes allowing each set of changes to have their own life cycle.

Example of removed warnings

WARNING: update-vals already refers to: #'clojure.core/update-vals in namespace: clojure.tools.analyzer.utils, being replaced by: #'clojure.tools.analyzer.utils/update-vals
WARNING: update-keys already refers to: #'clojure.core/update-keys in namespace: clojure.tools.analyzer.utils, being replaced by: #'clojure.tools.analyzer.utils/update-keys
WARNING: update-vals already refers to: #'clojure.core/update-vals in namespace: clojure.tools.analyzer, being replaced by: #'clojure.tools.analyzer.utils/update-vals
WARNING: update-keys already refers to: #'clojure.core/update-keys in namespace: clojure.tools.analyzer, being replaced by: #'clojure.tools.analyzer.utils/update-keys
WARNING: update-vals already refers to: #'clojure.core/update-vals in namespace: clojure.tools.analyzer.passes, being replaced by: #'clojure.tools.analyzer.utils/update-vals
WARNING: update-vals already refers to: #'clojure.core/update-vals in namespace: clojure.tools.analyzer.passes.uniquify, being replaced by: #'clojure.tools.analyzer.utils/update-vals
WARNING: abs already refers to: #'clojure.core/abs in namespace: medley.core, being replaced by: #'medley.core/abs

What are the changes?

• [compojure "1.6.3"]
• [nrepl/nrepl "1.1.0"]
• [org.clojure/core.cache "1.0.225"]
• [org.clojure/test.check "1.1.1"]
• [org.clojure/tools.reader "1.4.0"]

Required Checklist

• New and existing unit and int tests pass locally and remotely
• clj-kondo has been run locally and all errors in changed files are corrected
• I have commented my code, particularly in hard-to-understand areas
• I have made changes to the documentation (if necessary)
• My changes generate no new warnings in fact less!!!!!!!!

[codecov-commenter]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 57.95%. Comparing base (696964a) to head (b201e5d).
⚠️ Report is 1 commits behind head on master.

Additional details and impacted files

@@           Coverage Diff           @@
##           master    #2494   +/-   ##
=======================================
  Coverage   57.95%   57.95%           
=======================================
  Files        1074     1074           
  Lines       74707    74707           
  Branches     2191     2189    -2     
=======================================
  Hits        43294    43294           
  Misses      29365    29365           
  Partials     2048     2048           

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