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1. nmabbasi.github.io nmabbasi.github.io Public

   Academic Portfolio & Curriculum Vitae | Computational Biology & Single-Cell Transcriptomics

   CSS

2. OmicsFlow-BulkRNAseq OmicsFlow-BulkRNAseq Public

   End-to-end bulk RNA-seq analysis pipeline for HPC clusters (Nextflow + Snakemake) | QC → Trimming → Mapping → Quantification

   Shell 1

3. OmicsFlow-scRNAseq OmicsFlow-scRNAseq Public

   End-to-end scRNA-seq pipeline for HPC clusters (Nextflow + Snakemake) | Cell Ranger → QC → Integration → Clustering → Annotation → Advanced Analyses

   R 1

4. enblacar/SCpubr enblacar/SCpubr Public

   Generate high quality, publication ready visualizations for single cell transcriptomics data.

   R 243 15

5. Snakemake-PacBio-Assembly Snakemake-PacBio-Assembly Public

   Snakemake pipelines for PacBio genome assembly and reassembly

   Python

6. OmicsHub OmicsHub Public

   Bioinformatics Workflow Hub: Step-by-step tutorials for single-cell RNA-seq, HPC, and computational biology.

   HTML 1