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    Repositories list

    34 repositories

    • hupo26-spatial-proteomics-hub

      Public
      0•0•0•0•Updated Sep 28, 2026Sep 28, 2026

    • ICP4-data-visualization

      Public
      ICP4 data visualization project
      R
      •1•1•0•0•Updated Sep 23, 2026Sep 23, 2026

    • FenyoLab.org

      Public
      Astro
      •0•0•0•0•Updated Sep 11, 2026Sep 11, 2026

    • py-dcqc

      Public
      Python package for performing quality control (QC) for data coordination (DC)
      Python
      •
      Apache License 2.0
      •5•0•0•0•Updated Sep 9, 2026Sep 9, 2026

    • ont_analysis_pipeline

      Public
      Shell
      •0•0•0•0•Updated Jun 25, 2026Jun 25, 2026

    • EC_codeximaging

      Public
      This repository contains a Python pipeline for cell segmentation, phenotyping, and spatial analysis of whole-slide images (WSI) from endometrial cancer samples.
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated May 14, 2026May 14, 2026

    • L1EM

      Public
      Estimate locus specific human LINE-1 expression.
      Python
      •
      Other
      •13•42•5•0•Updated Jan 19, 2026Jan 19, 2026

    • ontpipe-test-data

      Public
      0•0•0•0•Updated Nov 25, 2025Nov 25, 2025

    • nanoseq

      Public
      Nanopore demultiplexing, QC and alignment pipeline
      Nextflow
      •
      MIT License
      •109•0•0•0•Updated Nov 20, 2025Nov 20, 2025

    • ML-BMSC-GA-4439-Deep-Learning

      Public
      2•1•0•0•Updated Oct 29, 2025Oct 29, 2025

    • copurification

      Public
      Perl
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Aug 25, 2025Aug 25, 2025

    • SAMPEI

      Public
      python3proteomicsxtandem
      python3proteomicsxtandem
      Python
      •
      MIT License
      •0•4•0•0•Updated Apr 13, 2025Apr 13, 2025

    • PGx

      Public
      PGx supports proteogenomic intregration of mass spectrometry (MS) proteomics data with next generation sequencing (NGS) by mapping identified peptides onto thei…
      Python
      •
      MIT License
      •6•10•2•0•Updated Jul 9, 2024Jul 9, 2024

    • Secretome_Predictor_Parsed

      Public
      Python
      •0•0•0•0•Updated Apr 10, 2024Apr 10, 2024

    • Ok-Seq_Processing

      Public
      This repository contains scripts for processing of Okazaki sequencing data.
      Python
      •
      GNU General Public License v2.0
      •0•1•0•0•Updated Feb 14, 2024Feb 14, 2024

    • recruitment_panel

      Public
      Python
      •0•0•0•0•Updated Jan 17, 2024Jan 17, 2024

    • llama-magic

      Public
      Perl
      •1•5•0•0•Updated Jul 9, 2023Jul 9, 2023

    • Llama_Nanobodies

      Public
      HTML
      •
      MIT License
      •0•1•0•0•Updated Jul 9, 2023Jul 9, 2023

    • FISH-spot-finding

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 28, 2023Mar 28, 2023

    • transposcope_ui

      Public
      Vue
      •
      MIT License
      •0•0•0•27•Updated Jan 5, 2023Jan 5, 2023

    • deep_learning_spring_2022

      Public
      This repository contains code to implement models for nucleus segmentation in microscopy images
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 8, 2022May 8, 2022

    • cdilab

      Public
      Python
      •0•0•0•0•Updated Mar 14, 2022Mar 14, 2022

    • Interaction-Factor-IJ-plugin

      Public
      The Interaction Factor is an ImageJ plugin to determine protein-protein interactions in super resolution microscopy images
      Java
      •0•1•0•0•Updated Mar 14, 2022Mar 14, 2022

    • cell-segmentation-analysis

      Public
      Jupyter Notebook
      •3•3•0•0•Updated Mar 14, 2022Mar 14, 2022

    • ImageAnalysisClass

      Public
      0•0•0•0•Updated Oct 5, 2021Oct 5, 2021

    • CRL4AMBRA1_img_analysis

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 8, 2021Feb 8, 2021

    • transposcope

      Public
      Python
      •
      MIT License
      •2•9•6•0•Updated May 21, 2020May 21, 2020

    • Cluster_Analysis

      Public
      Scripts for finding cluster distances from SMLM images.
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 5, 2020Feb 5, 2020

    • IFSimPy

      Public
      This repository contains python scripts implementing the calculation of the Interaction Factor (IF) for assessing the degree of interaction of molecules in fluo…
      Python
      •0•2•0•0•Updated Oct 4, 2019Oct 4, 2019

    • TIPseqHunter

      Public
      Shell
      •0•1•2•0•Updated Aug 12, 2018Aug 12, 2018
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