Platforma Open
Popular repositories Loading
-
samples-and-data
samples-and-data PublicImports your raw data — sequencing reads, count matrices, single-cell objects, tabular results — organizes it into named datasets, and attaches the sample metadata every downstream analysis groups …
-
deprecated-clonotype-browser
deprecated-clonotype-browser PublicClonotype Browser Block
TypeScript 4
-
mixcr-shm-trees
mixcr-shm-trees PublicBuild somatic hypermutation (SHM) lineage trees from antibody repertoire sequencing data. Reconstruct clonal relationships between antibody sequences and visualize how B-cell receptor (BCR) clones …
Vue 3
-
-
-
deprecated-mixcr-clonotyping
deprecated-mixcr-clonotyping PublicMiXCR Clonotyping Block
TypeScript 2
Repositories
- feature-integration Public
Platforma block: per-cell feature/antigen assignment from feature-barcode reads (BEAM)
- 3d-structure-prediction Public
Predict 3D structures of antibody and nanobody variable domains directly from sequence.
- 3D-Structure-Based-Liabilities Public
Identifying potential liabilities in therapeutic antibody candidates using 3D structure analysis. Takes a protein structure in PDB format through preprocessing and liability detection to flag developability risks.
- clonotype-space Public
Gives you one picture of an entire repertoire or library. Every clonotype, variant, or peptide becomes a point; points that are close together have similar sequences.
- antibody-sequence-liabilities Public
Screen antibody, TCR, and peptide sequences for developability liabilities — the motifs that cause deamidation, isomerization, fragmentation, unwanted glycosylation, oxidation, and cysteine problems.
- immune-assay-data Public
Imports assay data — binding measurements, antigen specificity, functional readouts — and uses MMseqs2 to align its sequences against your clonotypes or peptides, so the measurements land on the right candidates even when the sequences are not byte-identical.
- import-vdj-data Public
Imports V(D)J data from various formats, including MiXCR, immunoSeq, AiRR and more (bulk or single-cell) and normalizes them into one standard clonotype dataset that every downstream
- samples-and-data Public
Imports your raw data — sequencing reads, count matrices, single-cell objects, tabular results — organizes it into named datasets, and attaches the sample metadata every downstream analysis groups and compares by
People
This organization has no public members. You must be a member to see who’s a part of this organization.
Top languages
Loading…
Most used topics
Loading…