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…for out-of-the-box install - Remove examples* from setuptools excludes so `uv sync` makes examples importable - Add run.sh launcher to avoid uv/Ray env var conflict - Add NumPy-style docstrings to all 61 public Python files (core/ + examples/, excl. legacy) - Rewrite README with bilevel overview, ASCII flowchart, fixed quickstart, notebook link - Add examples/bilevel_fishery/README.md with full parameter guide for researchers - Annotate config.yaml and main_appo_one_mechanism_v1.yaml with inline comments - Add CHANGES.md summarising the branch for collaborators Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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