Issues

• Sequenza—— unused argument (parallel = 1)

  sztup/scarHRD#35 · Filter by author Dydy6 opened on Mar 2, 2026

• [Bug] Error "second argument must be a list" and "cannot open the connection" on chr22

  sztup/scarHRD#33 · Filter by author Sawakotx opened on Dec 24, 2025

• Error in scar_score

  sztup/scarHRD#32 · Filter by author abhijitswain09 opened on Jul 25, 2024
  1

• Error in Vroom connection size !

  sztup/scarHRD#31 · Filter by author ghost opened on Feb 9, 2024
  3

• Error in preprocess.seqz(seg, ploidy0 = ploidy, chr.in.names = chr.in.names) : object 'avg.depth.ratio' not found

  sztup/scarHRD#30 · Filter by author seetarajpara opened on Jan 1, 2024

• Collecting GC information Error in (function (x, col_types)

  sztup/scarHRD#29 · Filter by author deb0612 opened on Dec 18, 2023
  11

• what to do without sequenza

  sztup/scarHRD#28 · Filter by author ldelgado-serrano opened on Sep 29, 2023
  3

• ERROR of scar_score

  sztup/scarHRD#26 · Filter by author baekip opened on Aug 5, 2023
  1

• questions about input for scarHRD

  sztup/scarHRD#25 · Filter by author Huan-Wang-S4 opened on Jul 21, 2022
  1

• Err in scar_score

  sztup/scarHRD#24 · Filter by author qquuzhao opened on May 17, 2022
  2

• Link to sequenza in README.md is wrong

  sztup/scarHRD#23 · Filter by author kotliary opened on Jan 14, 2022
  1

• question about TAI

  sztup/scarHRD#22 · Filter by author sheny-bio opened on Nov 8, 2021
  2

• warning message

  sztup/scarHRD#21 · Filter by author sotaro-kanematsu opened on Oct 4, 2021
  5

• Writing output issues

  sztup/scarHRD#20 · Filter by author umasaxena opened on Jun 10, 2021
  2

• Could you please tag your project.

  sztup/scarHRD#19 · Filter by author fizwit opened on May 20, 2021

• confused code in preprocess.seqz.R

  sztup/scarHRD#18 · Filter by author JQWQJ opened on Mar 26, 2021
  1

• scarHRD input

  sztup/scarHRD#17 · Filter by author zhjianli opened on Feb 2, 2021

• quenstion with LST

  sztup/scarHRD#16 · Filter by author xxxxYxxxYxxY opened on Jan 28, 2021
  1

• program interrupted without any error information

  sztup/scarHRD#15 · Filter by author victor0104 opened on Dec 31, 2020
  1

• about hg38

  sztup/scarHRD#14 · Filter by author FromSoSimple opened on Dec 3, 2020
  1

• Running with other references

  sztup/scarHRD#13 · Filter by author vymao opened on Aug 5, 2020
  1

• Where is chrominfo_grch38?

  sztup/scarHRD#11 · Filter by author 1512474508 opened on Jun 28, 2020
  1

• Error in split.default(lis_obj, names(lis_obj)) :

  sztup/scarHRD#10 · Filter by author snashraf opened on May 30, 2020
  5

• hrd-sum of test1.small.seqz.gz not the same as it on introduction

  sztup/scarHRD#8 · Filter by author miffity999 opened on Feb 21, 2020

• scar_score() with allele-specific segmentation file fails with Error in [.data.frame(seg, , 8) : undefined columns selected

  sztup/scarHRD#7 · Filter by author ThomasGro opened on Feb 14, 2020
  7