apicomplexa

This repository was created to share the ImageJ macros we used in our PCIP invasion assays, the main idea is that the code can automatically count parasites/cells in as much as 1400 fields across 3 experiments containing a total of more than 100000 cells in under 12 hours.

Predict fitness phenotypes and invasion machinery in apicomplexan parasites from protein sequence using ESM-2 embeddings.