Calculate Peak-to-Trough Ratio (PTR), plot coverage graph, and perform quality control over contigs in a single pipeline integrating Glimmer3, Bowtie2, Sickle, and algorithms in R.
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Updated
Aug 15, 2019 - C
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genome-preprocessing
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Seed Aligner is a light-weight tool that detects a common seed region across genetic sequences and reorders them to start at the same point. It standardizes FASTA inputs for Covary without performing full multiple sequence alignment.
bioinformatics computational-biology bioinformatics-pipeline comparative-genomics genome-assembly alignment-free bioinformatics-analysis genetic genomic-data-analysis genome-alignment genome-preprocessing bioinformatics-pipelines sequence-normalization fasta-processing sequence-orientation seed-alignment covary genetics-analysis
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Updated
Nov 13, 2025
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