Tools for MRI mouse brain morphometry
Codes related to paper "Automated sleep stage classification of wide-field calcium imaging data via multiplex visibility graphs and deep learning"
Codes related to the paper "Attention-Based CNN-BiLSTM for Sleep States Classification of Spatiotemporal Wide-Field Calcium Imaging Data"
Animal-only macOS mouse-brain research planner with independent Allen CCF views, 3D probe visualization, bregma AP/ML/DV planning, and fail-closed data qualification.
Two-part parametric mould for casting agarose mouse brains. Includes 3 STL sizes, alignment script, and bilingual documentation.
3D mouse brain modeling using spatial mRNA data
The Mouse Hippocampal Brain Stack Dataset is a high-resolution dataset of serial-section microscopic images of the hippocampal region in a mouse brain. It is designed to support research on 3D reconstruction and non-rigid registration techniques.
Image Slicing with overlap. Takes an image, asks for user input about the number of rows and columns and slices into even parts. Customizable parameters.
Computational Neuroscience (SYDE 552)
A Python tool for mapping electrophysiology recording sites onto standardized mouse brain coordinates. Supports coronal, axial, and sagittal views with rapid visualization of electrophysiological data and anatomical locations.
Mouse brain proteins database for the course of "Introduction to Biotechnology" of the MSc DSIT @ NKUA.
An R/Seurat workflow for analyzing mouse-brain spatial transcriptomics data, including QC/normalization, spatially variable genes, and spatial visualization.
Windows of Susceptibility Analysis for Brain Diseases
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