omics-analysis

Matrix dissimilarity from the differences of Moments and sparsity

Method to find contrastive dimensions between experimental conditions

Divisive Intelligent K-Means algorithm (DiviK) for joint feature selection and clustering of heavily multidimensional data.

profiler desktop versions

Phenotyping data analysis

A curated list of papers on artificial intelligence for computational pathology, spatial transcriptomics, and single-cell genomics

Code for paper "Neurodevelopmental hijacking of oligodendrocyte lineage programs drives glioblastoma infiltration"

Omics Skills for Claude

Análisis de expresión diferencial de genes relacionados con la obesidad mediante RNA-seq

We implemented and generalized single-cell functions and targeted analytical code for single-cell omics data analysis.

Interstitial lung disease biomarker discovery using DIABLO. Integrates DNA methylation, transcriptome, and proteome. 30k features from 23 cases and 83 controls. Supervised learning model maximizing cross block covariance, adj R^2=0.73, 13 candidate biomarkers, with code and plots.

Multi-omics breast cancer analysis covering MOFA2 factor discovery, survival analysis and interactive Shiny dashboard

Personal portfolio enumerating my main omic analyses projects

Differential abundance analysis of microbiome data using statistical and Bayesian methods, including LEfSe and DESeq2 workflows.

Auditable desktop workflow for Progenesis QI LC–MS/MS curation: six-file reconciliation, QC-aware filtering, MS² evidence, repeated-identity resolution, chemistry/context scoring, and journal-ready exports

🧬 Analyze bulk RNA-seq time-course data using the ZRN01 dataset, streamlining visualization and interpretation with powerful tools and efficient workflows.