pbs-pro

High-End Application Execution (HEAppE) Middleware – HPC-as-a-Service and Quantum computing middleware enabling seamless job management, data transfer, and execution on supercomputers and quantum infrastructure.

Longbow is a tool for automating simulations on a remote HPC machine. Longbow is designed to mimic the normal way an application is run locally but allows simulations to be sent to powerful machines.

'PBS Pro' implementation of Ensembl Hive Meadow interface

A python script for checking a PBS Pro Job Scheduler queue

An example implementation for the Cromwell workflow management system on PBS Pro

Running nf-core/smrnaseq on NCI Gadi under PBS Pro and Singularity, plus a writeup of a silent trimming failure in the pipeline's NEXTFLEX profile.