Pinned Loading

1. tree-sitter-fasta tree-sitter-fasta Public

   Tree Sitter Parser for FASTA files

   JavaScript 4 1

2. GPIO-Driver GPIO-Driver Public

   Basic functions to drive GPIO pins

   Assembly

3. Lightbox-Image-Analyzer Lightbox-Image-Analyzer Public

   A pipeline for quantifying plant growth and greenness from overhead lightbox images

   Python

4. long-read-fermentation-viability-pipeline long-read-fermentation-viability-pipeline Public

   Snakemake pipeline for bacterial culture QC: flow cytometry cell counts, Cellpose microscopy viability, strain abundance from nanopore reads via expectation-maximization (EM), and Kraken2 contamina…

   Python

5. fermentation-growth-predictor fermentation-growth-predictor Public

   ML soft sensor predicting real-time biomass (OD) in a methanotroph bioreactor from off-gas signals. Gas mass-balance features (OUR, CER, MUR, RQ), XGBoost/Ridge/PLS benchmarked with leave-one-batch…

   Python

6. viability-web-app viability-web-app Public

   Bioreactor data portal: Django + HTMX front end with Dockerized analysis services for flow cytometry, microscopy viability, and Nanopore strain abundance.

   HTML