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76 changes: 76 additions & 0 deletions CURATOR-REPORT.md
Original file line number Diff line number Diff line change
Expand Up @@ -14,6 +14,82 @@ saves us guessing.

Last updated: 2026-09-20

## Answers to the 19 September round

Everything you marked in purple on the report, answered. Where I could check it
I did, and I say which; where I could not, I say that instead of guessing.

### Right-click in the diagram — it works, and it is your trackpad

Two of you reported no right-click menu, one noting "I use the touch pad
though". That is almost certainly it. Driven on beta against
`R-HSA-1368108`, a right-click on an entity opens the panel: 354x213 pixels,
positioned over the diagram, carrying the entity name and the Molecule /
Pathways / Interactors entries.

A trackpad sends no right-click at all unless secondary click is switched on.
On a Mac that is **System Settings -> Trackpad -> Secondary click**, or hold
**Ctrl** and click. On Windows, a two-finger tap.

If it still does nothing with Ctrl held, tell us, because then it is ours.

### Still open, and we agree with you

- **Which components of a complex or set are hit** — you said on 19 Sept you
still cannot see this in the diagram. #154 is open. The analysis _table_ can
flag each hit, which is the workaround you found; showing it on the complex
itself is the request ([#154](https://github.com/reactome/WebsiteAngular/issues/154)).
- **Hit reaction count is one off**, which moves FDR and the entity ratios
([#296](https://github.com/reactome/WebsiteAngular/issues/296)). The most
serious thing in the round, because every other finding is something being
hard to see and this one is a number being wrong. It needs the slide you
referenced, or any analysis token and the pathway where the count differs.
- **PPTX granularity** — entities move now, but an icon's border and centre are
separate shapes, and each reaction line segment moves alone. Partially fixed
is a fair description ([#299](https://github.com/reactome/WebsiteAngular/issues/299)) — the fix is grouping each entity's parts, not fewer shapes.
- **EHLD hover highlight** — hovering a subpathway in the hierarchy highlights
it on the live site and not here ([#297](https://github.com/reactome/WebsiteAngular/issues/297)).
- **Trivial molecules at zoom** — H2O and H+ still disappear when zooming out,
which contradicts the OK on that row ([#298](https://github.com/reactome/WebsiteAngular/issues/298)). We will take yours.

### Questions you asked

- _"Do you mean search for something in the diagram?"_ — yes. Type in the
diagram's search box, then flag the result.
- _"How do you opt to download the figure rather than the EHLD?"_ — a fair
question and we do not think the panel makes it clear. Treating it as a bug
in the panel rather than something to explain.
- _"Will we know a GIF or PPTX failed, or must we open it?"_ — for **GIF and
PPTX**, you will know: those come from the render service, which builds the
whole file before it answers, and the page saves nothing unless the whole of
it arrived. A failure is an error on screen and no file.

**Not true of every format**, and the difference is worth knowing. **SBML,
SBGN and PDF** come from the Java exporters, which stream while they
generate: a failure partway produces a **truncated file that looks
complete**, with no size known in advance to check against. Those are the
ones to open and verify.

An earlier draft of this answer said "if a file arrives, it was produced",
full stop. That is right for the two you asked about and wrong for the other
three, which is the worse half to get wrong — so it is corrected rather than
left for somebody to trust.

- _"I did not see an option to convert to editable shapes"_ — there is none to
find. PPTX shapes are already editable when the file opens; nothing needs
switching on.

### Fixed since you last looked

- **A searched entity being deselected when you navigate within a diagram**
(#168). Fixed. `select` was being overwritten with the pathway you were
leaving, so your own selection was discarded on one of the two ways out of a
diagram and kept on the other.
- **An error thrown when deleting a custom interactor resource** (#231).
- If you write a test URL by hand, the flag parameter is `flag=`. `FLG=` also
works. `flg=` is silently ignored and nothing will be flagged, which is worth
knowing before concluding flagging is broken.

## Please check on beta.reactome.org

> Note the URL. `beta.reactome.org` is the new site. `reactome.org/beta` is an
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