A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis
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Updated
Aug 11, 2026 - Python
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intrahost
Here are 3 public repositories matching this topic...
Scripts, analysis code, input data, and intermediate files for response to Soni et al.
diversity evolution slim nucleotide natural-selection nucleotide-diversity covid-19 sars-cov-2 evolutionary-simulation intrahost-genetic-diversity intrahost
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Apr 20, 2024 - R
Predicting true low-VAF SNVs in HPV using triplicate NGS samples and machine learning
machine-learning vcf cancer-genomics variant-calling snv vcf-files ngs-analysis hpv ion-torrent variant-call-format single-nucleotide-variation extreme-gradient-boosting intrahost-genetic-diversity intrahost vcfgenie human-papillomavirus isnv
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Jun 22, 2026 - Jupyter Notebook
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